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Author SHA1 Message Date
Tyson Whitehead
c03ec29828 JuliaCall: Update to 0.14 to resolve libjulia.so location issues 2018-11-28 23:08:49 -05:00
Tyson Whitehead
5e1a6acb68 rPackages: Implement overlay infrastructure 2018-11-28 23:07:34 -05:00
Tyson Whitehead
7f6c635426 Consistent file naming between overlays for eventual auto inclusion 2018-08-21 15:42:36 -04:00
Tyson Whitehead
c2c217660b Build overriden python packages too 2018-08-21 15:42:36 -04:00
Tyson Whitehead
ffc812c681 nixpkgsArgs applied to package results instead of arguement 2018-08-20 14:47:26 -04:00
Tyson Whitehead
303ee8a475 Filter non-derivations from automatic tests 
With pythonOverrides we now have non-derivations in the attributes
 2018-08-20 14:18:31 -04:00
Tyson Whitehead
ea5a813950 Support nixpkgsArgs (args passed to nixpkgs) for release build 
Default enabled allowUnfree by default (differs from upstream).
 2018-08-20 14:18:31 -04:00
Tyson Whitehead
4868e74714 Theano: Backport master as this one can't find libnvrtc.so 2018-08-10 17:44:42 -04:00
Tyson Whitehead
b6f66a65f5 tensorflow: Backport upstream as bazel build failing for current 2018-08-10 17:43:50 -04:00
Tyson Whitehead
d0a6a1bf3f openslide: Python portion into pythonPackages infrastructure 2018-08-10 17:43:23 -04:00
Tyson Whitehead
8f5981df31 pythonPackages: Implement overlay infrastructure 
Accumulate overlays in pythonOverrides attribute and then apply
them just once to base python packages.

https://github.com/NixOS/nixpkgs/issues/44426
 2018-08-10 17:43:23 -04:00
Tyson Whitehead
444bcbe26f pkgs: Do all version requirements as overrides in all-packages 2018-07-18 13:21:33 -04:00
Tyson Whitehead
6118f8b275 cloudcompare: Initial packaging 2018-07-17 00:17:52 -04:00
Tyson Whitehead
6971b0766b opengl: Rename of hook to more accurate insert-virtualgl 2018-07-14 10:43:17 -04:00
Tyson Whitehead
21d87c1e83 opengl: Comments and layout improvements 2018-07-14 10:42:00 -04:00
Tyson Whitehead
04de2db1d1 opengl: Disable pipefail to allow early out 
Prior operator || and putting builtins subshells workaround didn't
work with in all build shells.
 2018-07-14 10:39:25 -04:00
Tyson Whitehead
53b358b6d5 README: Test build with stable branch setting 2018-07-14 00:40:44 -04:00
Tyson Whitehead
886d1e23da opengl: callPackages overrides inner overide functions 
This behaviour is suitable for initial declarations, but not for
re-exporting overriden pacakges.  The outer layer is about the
wrapper and not something that we want independtly expose anyway.
 2018-07-13 12:29:47 -04:00
Tyson Whitehead
8db76b00da ovito: Initial packaging 2018-07-12 01:29:25 -04:00
Tyson Whitehead
115ac559ec opengl: Automatically insert virtualgl into opengl executables 2018-07-12 00:28:01 -04:00
Tyson Whitehead
fb163ecb85 nix: Should be pulling config from /nix/etc/nix and not /etc/nix 2018-07-11 16:39:44 -04:00
Tyson Whitehead
bf4e7a579f Upstream changed channel version suffix scheme 2018-06-29 00:35:26 -04:00
Tyson Whitehead
bcbb1ef4fb sambamba: Upgrade to 0.6.7 and compile with upstream ldc 
Fixes new compilation issues with tupple operator being dropped
 2018-06-27 14:19:23 -04:00
Tyson Whitehead
c72ea282b4 blast: Requires previous version of boost 2018-06-25 15:48:08 -04:00
Tyson Whitehead
01a6ed3f22 nix: Update patches for 2.0 
* Drop stat patch as was accepted upstream.
* NIX_REMOTE scheme is now URI based tcp://host:port
 2018-06-25 15:45:44 -04:00
Armin Sobhani
fde6c31445 add idba bioinformatics package 2018-06-25 15:38:22 -04:00
Tyson Whitehead
9ebec6056b Set SKIP_CC_CVMFS=1 in nix-shell pure mode to avoid CVMFS pollution 2018-04-25 14:07:28 -04:00
Tyson Whitehead
b3a150a471 blast: Package official ncbi-blast package 
Based on initial work by Armin.
 2018-04-24 16:46:55 -04:00
Tyson Whitehead
1c1f16a2b3 octopus: Switch to new version structure 2018-02-07 13:39:27 -05:00
Tyson Whitehead
bb7076d9f0 openfoam: Update hash and re-enable 2018-02-07 13:38:09 -05:00
Tyson Whitehead
159a3a8c0d README: Note commit message package: ... convention 2018-02-07 10:39:22 -05:00
Tyson Whitehead
7ec0d48784 README: Gabled sentance on entering nix-shell environments 2018-02-07 10:37:09 -05:00
Tyson Whitehead
6f98376d7f README: Line break in inline code messes up rendering 2018-02-07 10:36:28 -05:00
Tyson Whitehead
33be90dd1e README: The nix-env --install --attr needs the channel prefix 2018-02-07 10:36:14 -05:00
Tyson Whitehead
be9d77db0f README: Note that the nix module has to be loaded 2018-02-07 10:34:55 -05:00
Tyson Whitehead
6cb654e501 octopus: Initial packaging 2018-02-06 22:10:02 -05:00
Tyson Whitehead
e5a284589c README: Minor clarifications and cleanups 2018-02-06 15:20:33 -05:00
Tyson Whitehead
88de1da361 Rewrite of README for new overlay framework 2018-02-05 17:46:35 -05:00
Tyson Whitehead
1cb8792d05 Missing toString caused nixpkgs import if not using ./upstream 2018-01-30 11:58:38 -05:00
Tyson Whitehead
86b95e8349 Forgot to wind super through attribute queries for hydra in 1d156fc 2018-01-24 10:05:26 -05:00
Tyson Whitehead
06801cb4f0 temporary: nix: Work around for broken stat size #1645 2018-01-23 23:52:14 -05:00
Tyson Whitehead
820719fb02 nix: Patch to support NIX_DAEMON=<addr>:<port> 2018-01-23 23:46:45 -05:00
Tyson Whitehead
1d156fc470 Make super available in all-*.nix for override* use 2018-01-23 23:37:03 -05:00
Tyson Whitehead
39f4271d28 Tested hydra job to control release of channel (has to build okay) 2018-01-23 22:57:09 -05:00
Tyson Whitehead
c0ba1362eb Combine ccpkgs and nixpkgs versions together in suffix 
Want a unique name for the output product of each combination for
the channel-update code.
 2018-01-23 18:56:11 -05:00
Tyson Whitehead
e1171b5ed1 firedrake meraculous openfoam sumo: Disable broken packages 2018-01-20 15:30:12 -05:00
Tyson Whitehead
1825738822 sambamba: Add package from asobhani/nix-bioinfo-pkgs-sharcnet 2018-01-19 12:08:53 -05:00
Tyson Whitehead
30dbd204e7 Include hydra targets for contained pkgs and temporaries 2018-01-19 04:17:57 -05:00
Tyson Whitehead
8b85483c50 Add release code for building channel (drop nixpkgs submodule) 
Decided it would be best if hydra just provided the latest stable
nixpkgs for us to use.  This way there is no need for an udpate
script that polutes our logs with update submodule commits.
 2018-01-19 03:40:19 -05:00
Tyson Whitehead
b3f97768e9 temporary: Add separate space for temporary overlays 
These are intended for temporary fixes to upstream that are
expected to be dropped when incorporated in upstream.
 2018-01-19 02:15:00 -05:00