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Author SHA1 Message Date
Tyson Whitehead
5b96358a18 Filter packages that throw an error when evaluated (disabled python) 2019-05-02 10:51:16 -04:00
Tyson Whitehead
7736b409f4 opengl: Do VirtualGL preload conditioning on VGL_DISPLAY 
Preloading is done by doing a binary patch to the library to add it
as a dependency. The 2.3 series of glibc will let this be done with
just a wrapper that calls ld.so and with the --preload option.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
3825783ee5 pybedtools: Disable tests on python3 due to TypeError issue 
Ran small example on website to verify package isn't totally dead.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
05b4a13c47 pybedtools: Initial packaging 2019-04-30 15:24:32 -04:00
Tyson Whitehead
1965334f5a minia: Add all platforms and enable parallel building 2019-03-15 10:58:52 -04:00
Tyson Whitehead
4337c7bae2 minia: Wrong path to licenses attribute 2019-03-15 10:57:52 -04:00
Tyson Whitehead
5dac1b30ad minia: Initial packaging 2019-03-15 10:27:20 -04:00
Tyson Whitehead
99a1f1b32b igv: Disable LCD sub-pixel rendering as bug gives missing letters 2019-03-13 02:42:11 -04:00
Tyson Whitehead
c03ec29828 JuliaCall: Update to 0.14 to resolve libjulia.so location issues 2018-11-28 23:08:49 -05:00
Tyson Whitehead
5e1a6acb68 rPackages: Implement overlay infrastructure 2018-11-28 23:07:34 -05:00
Tyson Whitehead
7f6c635426 Consistent file naming between overlays for eventual auto inclusion 2018-08-21 15:42:36 -04:00
Tyson Whitehead
c2c217660b Build overriden python packages too 2018-08-21 15:42:36 -04:00
Tyson Whitehead
ffc812c681 nixpkgsArgs applied to package results instead of arguement 2018-08-20 14:47:26 -04:00
Tyson Whitehead
303ee8a475 Filter non-derivations from automatic tests 
With pythonOverrides we now have non-derivations in the attributes
 2018-08-20 14:18:31 -04:00
Tyson Whitehead
ea5a813950 Support nixpkgsArgs (args passed to nixpkgs) for release build 
Default enabled allowUnfree by default (differs from upstream).
 2018-08-20 14:18:31 -04:00
Tyson Whitehead
4868e74714 Theano: Backport master as this one can't find libnvrtc.so 2018-08-10 17:44:42 -04:00
Tyson Whitehead
b6f66a65f5 tensorflow: Backport upstream as bazel build failing for current 2018-08-10 17:43:50 -04:00
Tyson Whitehead
d0a6a1bf3f openslide: Python portion into pythonPackages infrastructure 2018-08-10 17:43:23 -04:00
Tyson Whitehead
8f5981df31 pythonPackages: Implement overlay infrastructure 
Accumulate overlays in pythonOverrides attribute and then apply
them just once to base python packages.

https://github.com/NixOS/nixpkgs/issues/44426
 2018-08-10 17:43:23 -04:00
Tyson Whitehead
444bcbe26f pkgs: Do all version requirements as overrides in all-packages 2018-07-18 13:21:33 -04:00
Tyson Whitehead
6118f8b275 cloudcompare: Initial packaging 2018-07-17 00:17:52 -04:00
Tyson Whitehead
6971b0766b opengl: Rename of hook to more accurate insert-virtualgl 2018-07-14 10:43:17 -04:00
Tyson Whitehead
21d87c1e83 opengl: Comments and layout improvements 2018-07-14 10:42:00 -04:00
Tyson Whitehead
04de2db1d1 opengl: Disable pipefail to allow early out 
Prior operator || and putting builtins subshells workaround didn't
work with in all build shells.
 2018-07-14 10:39:25 -04:00
Tyson Whitehead
53b358b6d5 README: Test build with stable branch setting 2018-07-14 00:40:44 -04:00
Tyson Whitehead
886d1e23da opengl: callPackages overrides inner overide functions 
This behaviour is suitable for initial declarations, but not for
re-exporting overriden pacakges.  The outer layer is about the
wrapper and not something that we want independtly expose anyway.
 2018-07-13 12:29:47 -04:00
Tyson Whitehead
8db76b00da ovito: Initial packaging 2018-07-12 01:29:25 -04:00
Tyson Whitehead
115ac559ec opengl: Automatically insert virtualgl into opengl executables 2018-07-12 00:28:01 -04:00
Tyson Whitehead
fb163ecb85 nix: Should be pulling config from /nix/etc/nix and not /etc/nix 2018-07-11 16:39:44 -04:00
Tyson Whitehead
bf4e7a579f Upstream changed channel version suffix scheme 2018-06-29 00:35:26 -04:00
Tyson Whitehead
bcbb1ef4fb sambamba: Upgrade to 0.6.7 and compile with upstream ldc 
Fixes new compilation issues with tupple operator being dropped
 2018-06-27 14:19:23 -04:00
Tyson Whitehead
c72ea282b4 blast: Requires previous version of boost 2018-06-25 15:48:08 -04:00
Tyson Whitehead
01a6ed3f22 nix: Update patches for 2.0 
* Drop stat patch as was accepted upstream.
* NIX_REMOTE scheme is now URI based tcp://host:port
 2018-06-25 15:45:44 -04:00
Armin Sobhani
fde6c31445 add idba bioinformatics package 2018-06-25 15:38:22 -04:00
Tyson Whitehead
9ebec6056b Set SKIP_CC_CVMFS=1 in nix-shell pure mode to avoid CVMFS pollution 2018-04-25 14:07:28 -04:00
Tyson Whitehead
b3a150a471 blast: Package official ncbi-blast package 
Based on initial work by Armin.
 2018-04-24 16:46:55 -04:00
Tyson Whitehead
1c1f16a2b3 octopus: Switch to new version structure 2018-02-07 13:39:27 -05:00
Tyson Whitehead
bb7076d9f0 openfoam: Update hash and re-enable 2018-02-07 13:38:09 -05:00
Tyson Whitehead
159a3a8c0d README: Note commit message package: ... convention 2018-02-07 10:39:22 -05:00
Tyson Whitehead
7ec0d48784 README: Gabled sentance on entering nix-shell environments 2018-02-07 10:37:09 -05:00
Tyson Whitehead
6f98376d7f README: Line break in inline code messes up rendering 2018-02-07 10:36:28 -05:00
Tyson Whitehead
33be90dd1e README: The nix-env --install --attr needs the channel prefix 2018-02-07 10:36:14 -05:00
Tyson Whitehead
be9d77db0f README: Note that the nix module has to be loaded 2018-02-07 10:34:55 -05:00
Tyson Whitehead
6cb654e501 octopus: Initial packaging 2018-02-06 22:10:02 -05:00
Tyson Whitehead
e5a284589c README: Minor clarifications and cleanups 2018-02-06 15:20:33 -05:00
Tyson Whitehead
88de1da361 Rewrite of README for new overlay framework 2018-02-05 17:46:35 -05:00
Tyson Whitehead
1cb8792d05 Missing toString caused nixpkgs import if not using ./upstream 2018-01-30 11:58:38 -05:00
Tyson Whitehead
86b95e8349 Forgot to wind super through attribute queries for hydra in 1d156fc 2018-01-24 10:05:26 -05:00
Tyson Whitehead
06801cb4f0 temporary: nix: Work around for broken stat size #1645 2018-01-23 23:52:14 -05:00
Tyson Whitehead
820719fb02 nix: Patch to support NIX_DAEMON=<addr>:<port> 2018-01-23 23:46:45 -05:00