Tyson Whitehead
400422accd
pythonPackages: Update for python version changes
2021-01-28 17:16:11 -05:00
Tyson Whitehead
ecb268b423
ovito: 2.9.0 -> 3.3.5 (older openssl depedency may be insecure)
2021-01-28 17:16:11 -05:00
Tyson Whitehead
eed2202981
opengl: Update VirtualGL system (mostly for switch to meson build)
2021-01-28 17:16:11 -05:00
Tyson Whitehead
941f347474
openfoam: Version requires GCC 7.x
2021-01-28 17:16:11 -05:00
Tyson Whitehead
d43c0d3223
cryptominisat, octopus, libxc: Upstream now
2021-01-28 17:16:11 -05:00
Tyson Whitehead
a2ed61d47b
nix: Bring NIX_REMOTE tcp patch up-to-date
2021-01-28 17:16:11 -05:00
Tyson Whitehead
c6c75bb897
temporary: Drop workarounds for previous upstream version
2021-01-28 17:16:11 -05:00
Tyson Whitehead
e15bd037d4
Switch to 19.09 upstream
2021-01-28 17:16:11 -05:00
Tyson Whitehead
ea5b0088cb
opengl: Don't wrap shared libraries or anything already wrapped
...
Some QT libraries are also executables. Wrapping them breaks
linking against the library.
2021-01-28 17:16:11 -05:00
Tyson Whitehead
12593a159a
opengl: VirtualGL trailing deliminator issue causing rpath skippage
...
Bash read returns false if trailing deliminator is not found causing
the while read -d ':' loop to not process the last rpath entry.
2020-07-31 11:46:52 -04:00
Tyson Whitehead
560abb236e
ninja: Ninja issues 1510 patch source update to ninja upstream
2020-03-19 14:08:40 -04:00
Tyson Whitehead
218174a96a
Upstream dropped unpack-channel binaryCacheURL argument in nix
2020-01-09 11:34:04 -05:00
Tyson Whitehead
9d4ffc6b15
mfix: Local copy of sources as S3 authorization times out
2020-01-07 10:12:32 -05:00
Tyson Whitehead
15c45abf09
mfix: Initial packaging
2019-12-20 15:42:59 -05:00
Tyson Whitehead
d6e2d42354
vtk: Include pythong bindings
2019-12-20 15:36:35 -05:00
Tyson Whitehead
0bbaae3038
smoove: Initial packaging
2019-11-08 10:03:51 -05:00
Tyson Whitehead
3902499aaf
svtyper: Initial packaging
2019-11-07 17:26:51 -05:00
Tyson Whitehead
ded9f94444
gsort: Initial packaging
2019-11-07 17:26:34 -05:00
Tyson Whitehead
05a704f989
lumpy: bamkit python files should be in bamkit subdirectory
2019-10-30 13:07:39 -04:00
Tyson Whitehead
6fefb5f7c1
octave: Fix abort due to missing gl2ps library ( #38459 )
2019-10-30 12:29:37 -04:00
Tyson Whitehead
e3993e3a55
lumpy: Initial packaging
2019-10-29 14:47:21 -04:00
Tyson Whitehead
d722075b64
samblaster: Initial packaging
2019-10-29 14:47:19 -04:00
Tyson Whitehead
1c1b029b58
octopus libxc: Change source as upstream tdft.org has disappeared
2019-09-19 15:25:38 -04:00
Tyson Whitehead
db8655693e
cutadapt: Initial packaging
2019-06-25 11:56:13 -04:00
Tyson Whitehead
81f206189a
dnaio: Initial packaging
2019-06-25 11:55:47 -04:00
Tyson Whitehead
db14501e23
xopen: Initial packaging
2019-06-25 11:55:34 -04:00
Tyson Whitehead
4d3da4bd51
opengl: VirtualGL use system nvidia libraries /usr/lib(|64)/nvidia
2019-06-13 12:12:25 -04:00
Tyson Whitehead
2f169a049e
opengl: Accidental double suffix on VirtualGL preload lib
2019-06-06 11:55:10 -04:00
Tyson Whitehead
d1e33d2509
fastqc: Correct license attribute
2019-06-05 22:56:49 -04:00
Tyson Whitehead
cac2a63b32
fastqc: Initial packaging
2019-06-05 20:12:39 -04:00
Tyson Whitehead
3aeab1dd97
opengl: Use glxgallium Mesa when VirtualGL is not appropriate
2019-06-05 20:11:39 -04:00
Tyson Whitehead
cd8953a282
opengl: Accidentally left debug dumps in
2019-05-15 12:25:48 -04:00
Tyson Whitehead
fd773491ac
temporary: Drop workarounds for previous upstream version
2019-05-14 10:39:01 -04:00
Tyson Whitehead
84f49e7375
Switch to 19.03 upstream
2019-05-14 10:39:01 -04:00
Tyson Whitehead
6ecbf29f61
namd: Use upstream git repos for sources and nix dependencies
2019-05-09 13:05:08 -04:00
Tyson Whitehead
d21031cf2a
openfoam: Namespace conflict with point due to newer CGAL library
2019-05-08 13:42:41 -04:00
Tyson Whitehead
73d08ba015
sambamba: 0.6.7 -> 0.6.9 (required by newer ldc)
2019-05-07 14:41:30 -04:00
Tyson Whitehead
eb3a39c3ec
opengl: Mimetype no longer detects shared libraries after pie issues
2019-05-03 10:11:39 -04:00
Tyson Whitehead
8be0a79790
ovito: Missing include in header (exposed by newer qt moc?)
2019-05-02 11:54:43 -04:00
Tyson Whitehead
e7f97c0bae
minia: Passes -Wno-format so need to disable format hardening
2019-05-02 11:54:43 -04:00
Tyson Whitehead
0ff19d8d05
lapack: Make without atlas default as currently broken ( #49594 )
...
Atlas is actually entirely removed in latest upstream.
2019-05-02 11:54:43 -04:00
Tyson Whitehead
91cdf647a4
opengl: Update for newer libglvndr setup
2019-05-02 11:54:43 -04:00
Tyson Whitehead
adaf5a1a03
temporary: Drop workarounds for previous upstream version
2019-05-02 11:54:43 -04:00
Tyson Whitehead
e20980dd84
Switch to 18.09 upstream
2019-05-02 11:54:43 -04:00
Tyson Whitehead
d5b35e9d00
sambamba: Upstream github repo owner change
2019-05-02 11:49:17 -04:00
Tyson Whitehead
4a2ef9563b
octopus: libxc 4.0.4 tarball hash update (notified upstream)
2019-05-02 11:01:55 -04:00
Tyson Whitehead
c5272a03b8
ghmm: Initial packaging including split off python2 interface
2019-05-02 10:55:02 -04:00
Tyson Whitehead
5b96358a18
Filter packages that throw an error when evaluated (disabled python)
2019-05-02 10:51:16 -04:00
Tyson Whitehead
7736b409f4
opengl: Do VirtualGL preload conditioning on VGL_DISPLAY
...
Preloading is done by doing a binary patch to the library to add it
as a dependency. The 2.3 series of glibc will let this be done with
just a wrapper that calls ld.so and with the --preload option.
2019-04-30 16:33:59 -04:00
Tyson Whitehead
3825783ee5
pybedtools: Disable tests on python3 due to TypeError issue
...
Ran small example on website to verify package isn't totally dead.
2019-04-30 16:33:59 -04:00
