Syzygial/ccpkgs
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130 Commits

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Author SHA1 Message Date
Tyson Whitehead
0bbaae3038 smoove: Initial packaging 2019-11-08 10:03:51 -05:00
Tyson Whitehead
3902499aaf svtyper: Initial packaging 2019-11-07 17:26:51 -05:00
Tyson Whitehead
ded9f94444 gsort: Initial packaging 2019-11-07 17:26:34 -05:00
Tyson Whitehead
05a704f989 lumpy: bamkit python files should be in bamkit subdirectory 2019-10-30 13:07:39 -04:00
Tyson Whitehead
6fefb5f7c1 octave: Fix abort due to missing gl2ps library (#38459) 2019-10-30 12:29:37 -04:00
Tyson Whitehead
e3993e3a55 lumpy: Initial packaging 2019-10-29 14:47:21 -04:00
Tyson Whitehead
d722075b64 samblaster: Initial packaging 2019-10-29 14:47:19 -04:00
Tyson Whitehead
1c1b029b58 octopus libxc: Change source as upstream tdft.org has disappeared 2019-09-19 15:25:38 -04:00
Tyson Whitehead
db8655693e cutadapt: Initial packaging 2019-06-25 11:56:13 -04:00
Tyson Whitehead
81f206189a dnaio: Initial packaging 2019-06-25 11:55:47 -04:00
Tyson Whitehead
db14501e23 xopen: Initial packaging 2019-06-25 11:55:34 -04:00
Tyson Whitehead
4d3da4bd51 opengl: VirtualGL use system nvidia libraries /usr/lib(|64)/nvidia 2019-06-13 12:12:25 -04:00
Tyson Whitehead
2f169a049e opengl: Accidental double suffix on VirtualGL preload lib 2019-06-06 11:55:10 -04:00
Tyson Whitehead
d1e33d2509 fastqc: Correct license attribute 2019-06-05 22:56:49 -04:00
Tyson Whitehead
cac2a63b32 fastqc: Initial packaging 2019-06-05 20:12:39 -04:00
Tyson Whitehead
3aeab1dd97 opengl: Use glxgallium Mesa when VirtualGL is not appropriate 2019-06-05 20:11:39 -04:00
Tyson Whitehead
cd8953a282 opengl: Accidentally left debug dumps in 2019-05-15 12:25:48 -04:00
Tyson Whitehead
fd773491ac temporary: Drop workarounds for previous upstream version 2019-05-14 10:39:01 -04:00
Tyson Whitehead
84f49e7375 Switch to 19.03 upstream 2019-05-14 10:39:01 -04:00
Tyson Whitehead
6ecbf29f61 namd: Use upstream git repos for sources and nix dependencies 2019-05-09 13:05:08 -04:00
Tyson Whitehead
d21031cf2a openfoam: Namespace conflict with point due to newer CGAL library 2019-05-08 13:42:41 -04:00
Tyson Whitehead
73d08ba015 sambamba: 0.6.7 -> 0.6.9 (required by newer ldc) 2019-05-07 14:41:30 -04:00
Tyson Whitehead
eb3a39c3ec opengl: Mimetype no longer detects shared libraries after pie issues 2019-05-03 10:11:39 -04:00
Tyson Whitehead
8be0a79790 ovito: Missing include in header (exposed by newer qt moc?) 2019-05-02 11:54:43 -04:00
Tyson Whitehead
e7f97c0bae minia: Passes -Wno-format so need to disable format hardening 2019-05-02 11:54:43 -04:00
Tyson Whitehead
0ff19d8d05 lapack: Make without atlas default as currently broken (#49594) 
Atlas is actually entirely removed in latest upstream.
 2019-05-02 11:54:43 -04:00
Tyson Whitehead
91cdf647a4 opengl: Update for newer libglvndr setup 2019-05-02 11:54:43 -04:00
Tyson Whitehead
adaf5a1a03 temporary: Drop workarounds for previous upstream version 2019-05-02 11:54:43 -04:00
Tyson Whitehead
e20980dd84 Switch to 18.09 upstream 2019-05-02 11:54:43 -04:00
Tyson Whitehead
d5b35e9d00 sambamba: Upstream github repo owner change 2019-05-02 11:49:17 -04:00
Tyson Whitehead
4a2ef9563b octopus: libxc 4.0.4 tarball hash update (notified upstream) 2019-05-02 11:01:55 -04:00
Tyson Whitehead
c5272a03b8 ghmm: Initial packaging including split off python2 interface 2019-05-02 10:55:02 -04:00
Tyson Whitehead
5b96358a18 Filter packages that throw an error when evaluated (disabled python) 2019-05-02 10:51:16 -04:00
Tyson Whitehead
7736b409f4 opengl: Do VirtualGL preload conditioning on VGL_DISPLAY 
Preloading is done by doing a binary patch to the library to add it
as a dependency. The 2.3 series of glibc will let this be done with
just a wrapper that calls ld.so and with the --preload option.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
3825783ee5 pybedtools: Disable tests on python3 due to TypeError issue 
Ran small example on website to verify package isn't totally dead.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
05b4a13c47 pybedtools: Initial packaging 2019-04-30 15:24:32 -04:00
Tyson Whitehead
1965334f5a minia: Add all platforms and enable parallel building 2019-03-15 10:58:52 -04:00
Tyson Whitehead
4337c7bae2 minia: Wrong path to licenses attribute 2019-03-15 10:57:52 -04:00
Tyson Whitehead
5dac1b30ad minia: Initial packaging 2019-03-15 10:27:20 -04:00
Tyson Whitehead
99a1f1b32b igv: Disable LCD sub-pixel rendering as bug gives missing letters 2019-03-13 02:42:11 -04:00
Tyson Whitehead
c03ec29828 JuliaCall: Update to 0.14 to resolve libjulia.so location issues 2018-11-28 23:08:49 -05:00
Tyson Whitehead
5e1a6acb68 rPackages: Implement overlay infrastructure 2018-11-28 23:07:34 -05:00
Tyson Whitehead
7f6c635426 Consistent file naming between overlays for eventual auto inclusion 2018-08-21 15:42:36 -04:00
Tyson Whitehead
c2c217660b Build overriden python packages too 2018-08-21 15:42:36 -04:00
Tyson Whitehead
ffc812c681 nixpkgsArgs applied to package results instead of arguement 2018-08-20 14:47:26 -04:00
Tyson Whitehead
303ee8a475 Filter non-derivations from automatic tests 
With pythonOverrides we now have non-derivations in the attributes
 2018-08-20 14:18:31 -04:00
Tyson Whitehead
ea5a813950 Support nixpkgsArgs (args passed to nixpkgs) for release build 
Default enabled allowUnfree by default (differs from upstream).
 2018-08-20 14:18:31 -04:00
Tyson Whitehead
4868e74714 Theano: Backport master as this one can't find libnvrtc.so 2018-08-10 17:44:42 -04:00
Tyson Whitehead
b6f66a65f5 tensorflow: Backport upstream as bazel build failing for current 2018-08-10 17:43:50 -04:00
Tyson Whitehead
d0a6a1bf3f openslide: Python portion into pythonPackages infrastructure 2018-08-10 17:43:23 -04:00