smoove: Initial packaging

pkgs/smoove/default.nix

@@ -0,0 +1,41 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.3.0
+{ stdenv, buildGoPackage, fetchgit, fetchhg, fetchbzr, fetchsvn, makeWrapper
+, gzip, gsort, htslib, lumpy, samtools, svtyper, mosdepth }:
+
+buildGoPackage rec {
+  name = "smoove-${version}";
+  version = "0.2.4";
+
+  goPackagePath = "github.com/brentp/smoove";
+
+  src = fetchgit {
+    rev = "v${version}";
+    url = "https://github.com/brentp/smoove.git";
+    sha256 = "0jyycc3rjy406qkc17pfagy44bnkmgk348plqwqqpcawdpwpj57v";
+  };
+
+  postFixup = ''
+    declare -p
+    wrapProgram "$bin/bin/smoove"        \
+      --suffix PATH : "${gzip}/bin"      \
+      --suffix PATH : "${gsort}/bin"     \
+      --suffix PATH : "${htslib}/bin"    \
+      --suffix PATH : "${lumpy}/bin"     \
+      --suffix PATH : "${samtools}/bin"  \
+      --suffix PATH : "${svtyper}/bin"   \
+      --suffix PATH : "${mosdepth}/bin"
+  '';
+
+  goDeps = ./deps.nix;
+
+  nativeBuildInputs = [
+    makeWrapper
+  ];
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/brentp/smoove;
+    description = "Wrap existing software and adds some internal read-filtering to simplify calling and genotyping structural variants.";
+    platforms = platforms.all;
+    license = licenses.asl20;
+  };
+}