42 lines
1.2 KiB
Nix
42 lines
1.2 KiB
Nix
# This file was generated by https://github.com/kamilchm/go2nix v1.3.0
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{ stdenv, buildGoPackage, fetchgit, fetchhg, fetchbzr, fetchsvn, makeWrapper
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, gzip, gsort, htslib, lumpy, samtools, svtyper, mosdepth }:
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buildGoPackage rec {
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name = "smoove-${version}";
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version = "0.2.4";
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goPackagePath = "github.com/brentp/smoove";
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src = fetchgit {
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rev = "v${version}";
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url = "https://github.com/brentp/smoove.git";
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sha256 = "0jyycc3rjy406qkc17pfagy44bnkmgk348plqwqqpcawdpwpj57v";
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};
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postFixup = ''
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declare -p
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wrapProgram "$bin/bin/smoove" \
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--suffix PATH : "${gzip}/bin" \
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--suffix PATH : "${gsort}/bin" \
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--suffix PATH : "${htslib}/bin" \
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--suffix PATH : "${lumpy}/bin" \
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--suffix PATH : "${samtools}/bin" \
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--suffix PATH : "${svtyper}/bin" \
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--suffix PATH : "${mosdepth}/bin"
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'';
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goDeps = ./deps.nix;
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nativeBuildInputs = [
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makeWrapper
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];
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meta = with stdenv.lib; {
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homepage = https://github.com/brentp/smoove;
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description = "Wrap existing software and adds some internal read-filtering to simplify calling and genotyping structural variants.";
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platforms = platforms.all;
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license = licenses.asl20;
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};
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}
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