50 lines
1.0 KiB
Nix
50 lines
1.0 KiB
Nix
{ stdenv, fetchFromGitHub, ldc
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, bash, python, glibc, which, rdmd, zlib }:
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stdenv.mkDerivation rec {
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version = "0.6.7";
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name = "sambamba-${version}";
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src = fetchFromGitHub {
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owner = "lomereiter";
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repo = "sambamba";
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rev = "v${version}";
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sha256 = "06fj6ayr57xcpinmsdmczfay13bbmq2f6zlvknzz9yhgsdkny9w3";
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fetchSubmodules = true;
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};
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postPatch = ''
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patchShebangs .
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sed -i '1s,$, undeaD/src/undead/utf.d,' *.rsp
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'';
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buildPhase = ''
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make sambamba-ldmd2-64
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'';
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installPhase = ''
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mkdir -p $out/bin
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mv build/sambamba $out/bin
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mv build/sambamba.debug $out/bin
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'';
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buildInputs = [
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bash
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python
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glibc
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ldc
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which
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rdmd
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zlib
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];
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meta = with stdenv.lib; {
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homepage = https://github.com/lomereiter/sambamba/wiki;
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description = "Sambamba is a set of command-line tools for working with SAM/BAM file formats which are used for storing next generation sequencing (NGS) datasets.";
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platforms = platforms.all;
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license = licenses.gpl2;
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};
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enableParallelBuilding = true;
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}
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