53 lines
1.7 KiB
Nix
53 lines
1.7 KiB
Nix
# final - next package set (after our additions)
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# prev - prior package set (before our additions)
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#
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final: prev: with prev; {
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fastqc = callPackage ./fastqc.nix { };
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#firedrake = callPackage ./firedrake { };
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ghmm = callPackage ./ghmm { };
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gsort = callPackage ./gsort { };
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lumpy = callPackage ./lumpy.nix { };
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#meraculous = callPackage ./meraculous.nix { let stdenv49 = overrideCC stdenv gcc49; in stdenv = stdenv49; boost = boost159.override { stdenv = stdenv49 }; };
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mfixgui = python38Packages.callPackage ./mfix/mfixgui.nix { };
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mfixsolver = callPackage ./mfix/mfixsolver.nix { };
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# inherit (callPackage ./opengl/default.nix { inherit prev; }) libGL mesa_glxgallium;
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openfoam = callPackage ./openfoam.nix { };
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openslide = callPackage ./openslide { };
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ovito = qt6Packages.callPackage ./ovito.nix { };
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pythonOverrides = lib.composeExtensions prev.pythonOverrides (import ./python-packages.nix pkgs);
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rOverrides = lib.composeExtensions prev.rOverrides (import ./r-modules.nix pkgs);
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smoove = callPackage ./smoove { };
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#sumo = callPackage ./sumo.nix { fox = fox_1_6; };
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namd = callPackage ./namd.nix { };
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sambamba = callPackage ./sambamba.nix { };
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samblaster = callPackage ./samblaster.nix { };
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svtyper = python38Packages.callPackage ./svtyper.nix { };
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idba = callPackage ./idba.nix { };
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# nixStable = ( prev.nixStable.override { confDir= "/nix/etc"; } ).overrideAttrs
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# ( attrs: { patches = attrs.patches or [] ++ [ ./nix/remote.patch ./nix/cvmfs.patch ]; } );
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nix = ( prev.nix.override { confDir = "/nix/etc"; } ).overrideAttrs
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( attrs: { patches = attrs.patches or [] ++ [ ./nix/remote.patch ./nix/cvmfs.patch ]; } );
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}
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