41 lines
1.4 KiB
Nix
41 lines
1.4 KiB
Nix
# Temporary stuff (e.g., upstream bug fixes that haven't landed)
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#
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# self - next package set (after our additions)
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# super - prior package set (before our additions)
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# pkgs - final package set (after everyone's additions)
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#
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self: super: pkgs: with pkgs; {
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# igv java library LCD sub-pixel fron rendering results in missing characters
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igv = super.igv.overrideAttrs (attrs: {
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postFixup = attrs.postFixup or "" + ''
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wrapProgram $out/bin/igv --suffix _JAVA_OPTIONS ' ' -Dawt.useSystemAAFontSettings=on
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'';
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nativeBuildInputs = attrs.nativeBuildInputs or [] ++ [
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makeWrapper
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];
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} );
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# https://github.com/NixOS/nixpkgs/issues/44426
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python27 = super.python27.override { packageOverrides = pythonOverrides; };
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python36 = super.python36.override { packageOverrides = pythonOverrides; };
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python37 = super.python37.override { packageOverrides = pythonOverrides; };
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python38 = super.python38.override { packageOverrides = pythonOverrides; };
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python39 = super.python39.override { packageOverrides = pythonOverrides; };
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pythonOverrides = import ./python-packages.nix pkgs;
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# same for R as Python (except we have to do the self/super plumbing)
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rPackages = super.rPackages.override {
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overrides =
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let
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overrides = rOverrides self super.rPackages;
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self = super.rPackages // overrides;
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in
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overrides;
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};
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rOverrides = import ./r-modules.nix pkgs;
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}
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