73 lines
1.7 KiB
Nix
73 lines
1.7 KiB
Nix
{ stdenv, fetchFromGitHub, callPackage
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, bash, python, glibc, dmd, which, rdmd, zlib }:
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let
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ldc = callPackage ./ldc.nix { };
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in
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stdenv.mkDerivation rec {
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version = "0.6.6";
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name = "sambamba-${version}";
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srcs = [
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(fetchFromGitHub {
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owner = "lomereiter";
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repo = "sambamba";
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rev = "63cfd5c7b3053e1f7045dec0b5a569f32ef73d06";
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sha256 = "0mla4d8pn3gcdxpwk1dpk7xcxm5dkv1af1z6lq5v2hk8wg7gc58p";
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fetchSubmodules = true;
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})
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(fetchFromGitHub {
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owner = "dlang";
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repo = "undeaD";
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rev = "7684274512a5610ac8536780f7a1cdd24d7087bc";
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sha256 = "0pi7if7fjngcnyjrv4q73hl4d020fj0dkwfrw66x9m25qmf77178";
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})
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];
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sourceRoot = "sambamba-63cfd5c7b3053e1f7045dec0b5a569f32ef73d06-src";
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postUnpack = ''
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cp -av undeaD-* $sourceRoot
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mv $sourceRoot/undeaD-* $sourceRoot/undeaD
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'';
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postPatch = ''
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patchShebangs .
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sed -i 's/-Bdynamic/-Bdynamic -ldl/' Makefile
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'';
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buildPhase = ''
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make sambamba-ldmd2-64
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'';
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installPhase = ''
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mkdir -p $out/bin
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mv build/sambamba $out/bin
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mv build/sambamba.debug $out/bin
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'';
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buildInputs = [
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bash
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python
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glibc
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dmd
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ldc
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which
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rdmd
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zlib
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];
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meta = with stdenv.lib; {
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homepage = https://github.com/lomereiter/sambamba/wiki;
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description = "Sambamba is a set of command-line tools for working with SAM/BAM file formats which are used for storing next generation sequencing (NGS) datasets.";
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platforms = platforms.all;
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license = licenses.gpl2;
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};
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enableParallelBuilding = true;
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}
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