32 lines
878 B
Nix
32 lines
878 B
Nix
{ lib, fetchFromGitHub, buildPythonPackage
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, cython, bedtools
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, zlib, six, pysam, pytest, psutil, pyaml }:
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buildPythonPackage rec {
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version = "0.8.0";
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name = "pybedtools-${version}";
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src = fetchFromGitHub {
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owner = "daler";
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repo = "pybedtools";
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rev = "v${version}";
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sha256 = "10c7rj07jz8v7r5yxfpwdx7dqfnrcncp16ry1y2cfk68awdnk122";
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};
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buildInputs = [ cython zlib ];
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propagatedBuildInputs = [ six pysam ];
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checkInputs = [ pytest psutil pyaml ];
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postPatch = ''
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sed -i -e '$ahelpers.set_bedtools_path('\'''${bedtools}/bin'\''')' pybedtools/__init__.py
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'';
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preBuild = ''
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python setup.py cythonize
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'';
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meta = with lib; {
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homepage = "http://daler.github.io/pybedtools";
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description = "pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python.";
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license = licenses.lgpl2Plus;
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};
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} |