57 lines
1.3 KiB
Nix
57 lines
1.3 KiB
Nix
{ stdenv, fetchsvn, autoreconfHook, pkg-config
|
|
, libxml2, python2Packages, swig }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
name = "ghmm-svn${version}";
|
|
version = "2341";
|
|
|
|
src = fetchsvn {
|
|
url = "https://svn.code.sf.net/p/ghmm/code/trunk/ghmm";
|
|
rev = "${version}";
|
|
sha256 = "067anx9mhs0f4f38q4wj2fds1pkp0jcy10i0fhggvrcp31gy0329";
|
|
};
|
|
|
|
#patches = [ ./static-lib-for-tools.patch ];
|
|
postPatch = ''
|
|
sed -i -e 's,\(LDADD = .*/ghmm/\.libs/libghmm\)\.a,\1.la,' */Makefile.am
|
|
'';
|
|
|
|
# The python wrapper needs to be built here for dependencies
|
|
outputs = [ "out" "py" ];
|
|
|
|
configureFlags = [
|
|
"--without-python"
|
|
];
|
|
|
|
postBuild = ''
|
|
cd ghmmwrapper
|
|
python setup.py build
|
|
cd ..
|
|
'';
|
|
|
|
postInstall = ''
|
|
cd ghmmwrapper
|
|
python setup.py install --prefix="$py"
|
|
cd ..
|
|
'';
|
|
|
|
buildInputs = [
|
|
autoreconfHook
|
|
pkg-config
|
|
libxml2
|
|
python2Packages.python
|
|
swig
|
|
];
|
|
|
|
hardeningDisable = [ "format" ];
|
|
|
|
meta = with lib; {
|
|
description = "The General Hidden Markov Model library (GHMM) is a freely available C library implementing efficient data structures and algorithms for basic and extended HMMs with discrete and continous emissions.";
|
|
homepage = http://ghmm.sourceforge.net;
|
|
platforms = platforms.all;
|
|
license = licenses.lgpl2Plus;
|
|
};
|
|
|
|
enableParallelBuilding = true;
|
|
}
|