32 lines
751 B
Nix
32 lines
751 B
Nix
{ lib, fetchPypi, buildPythonApplication
|
|
, scipy, cytoolz, pysam
|
|
, pytest, pytestrunner }:
|
|
|
|
buildPythonApplication rec {
|
|
version = "0.7.1";
|
|
pname = "svtyper";
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
sha256 = "1fryl5h947sf8rxj7pzrzjfy6is8xhq6yz25sd8hq88563mkianh";
|
|
};
|
|
|
|
postPatch = ''
|
|
substituteInPlace setup.py \
|
|
--replace o"pytest==4.6.4" "pytest"
|
|
'';
|
|
|
|
nativeBuildInputs = [ pytestrunner ];
|
|
propagatedBuildInputs = [ scipy cytoolz pysam ];
|
|
checkInputs = [ pytest ];
|
|
|
|
# test infrastructure, but no tests in the package
|
|
doCheck = false;
|
|
|
|
meta = with lib; {
|
|
homepage = https://github.com/hall-lab/svtyper;
|
|
description = "Bayesian genotyper for structural variants.";
|
|
license = licenses.mit;
|
|
};
|
|
}
|