43 lines
1.3 KiB
Nix
43 lines
1.3 KiB
Nix
{ stdenv, fetchFromGitHub
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, jdk, ant, makeWrapper
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, jre, perl }:
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stdenv.mkDerivation rec {
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name = "FastQC-${version}";
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version = "0.11.8";
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src = fetchFromGitHub {
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name = "${name}-src";
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owner = "s-andrews";
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repo = "FastQC";
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rev = "v${version}";
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sha256 = "1xyf54ylvpv9kp110sf0hp1lqzx8plxh7a0k5yipggyqqhviv77j";
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};
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buildInputs = [ perl jdk ant makeWrapper ];
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buildPhase = "ant";
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installPhase = ''
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install -d $out/share/FastQC $out/bin
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install bin/fastqc $out/share/FastQC
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cp -r bin/{Configuration,Help,Templates} $out/share/FastQC/
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cp -r bin/{net,org,uk} $out/share/FastQC/
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makeWrapper $out/share/FastQC/fastqc $out/bin/fastqc --add-flags --java=${jre}/bin/java
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'';
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meta = with stdenv.lib; {
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homepage = https://www.bioinformatics.babraham.ac.uk/projects/fastqc/;
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description = "A quality control tool for high throughput sequence data";
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longDescription = ''
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FastQC aims to provide a simple way to do some quality control
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checks on raw sequence data coming from high throughput
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sequencing pipelines. It provides a modular set of analyses
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which you can use to give a quick impression of whether your
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data has any problems of which you should be aware before doing
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any further analysis.
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'';
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platforms = platforms.all;
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license = licenses.gpl2Plus;
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};
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}
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