{ stdenv, fetchFromGitHub, ldc
, bash, python, glibc, which, rdmd, zlib }:

stdenv.mkDerivation rec {
  version = "0.6.7";
  name = "sambamba-${version}";

  src = fetchFromGitHub {
    owner = "biod";
    repo = "sambamba";
    rev = "v${version}";
    sha256 = "06fj6ayr57xcpinmsdmczfay13bbmq2f6zlvknzz9yhgsdkny9w3";
    fetchSubmodules = true;
  };

  postPatch = ''
    patchShebangs .
    sed -i '1s,$, undeaD/src/undead/utf.d,' *.rsp
  '';

  buildPhase = ''
    make sambamba-ldmd2-64
  '';

  installPhase = ''
    mkdir -p $out/bin
    mv build/sambamba $out/bin
    mv build/sambamba.debug $out/bin
  '';

  buildInputs = [
    bash
    python
    glibc
    ldc
    which
    rdmd
    zlib
  ];

  meta = with stdenv.lib; {
    homepage = https://github.com/lomereiter/sambamba/wiki;
    description = "Sambamba is a set of command-line tools for working with SAM/BAM file formats which are used for storing next generation sequencing (NGS) datasets.";
    platforms = platforms.all;
    license = licenses.gpl2;
  };

  enableParallelBuilding = true;
}