{ stdenv, fetchFromGitHub, callPackage
, bash, python, glibc, dmd, which, rdmd, zlib }:

let

  ldc = callPackage ./ldc.nix { };

in

  stdenv.mkDerivation rec {
    version = "0.6.6";
    name = "sambamba-${version}";

    srcs = [
        (fetchFromGitHub {
          owner = "lomereiter";
          repo = "sambamba";
          rev = "63cfd5c7b3053e1f7045dec0b5a569f32ef73d06";
          sha256 = "0mla4d8pn3gcdxpwk1dpk7xcxm5dkv1af1z6lq5v2hk8wg7gc58p";
          fetchSubmodules = true;
        })
        (fetchFromGitHub {
          owner = "dlang";
          repo = "undeaD";
          rev = "7684274512a5610ac8536780f7a1cdd24d7087bc";
          sha256 = "0pi7if7fjngcnyjrv4q73hl4d020fj0dkwfrw66x9m25qmf77178";
        })
    ];


    sourceRoot = "sambamba-63cfd5c7b3053e1f7045dec0b5a569f32ef73d06-src";

    postUnpack = ''
       cp -av undeaD-* $sourceRoot
       mv $sourceRoot/undeaD-* $sourceRoot/undeaD
    '';

    postPatch = ''
      patchShebangs .
      sed -i 's/-Bdynamic/-Bdynamic -ldl/' Makefile
    '';

    buildPhase = ''
      make sambamba-ldmd2-64
    '';

    installPhase = ''
      mkdir -p $out/bin
      mv build/sambamba $out/bin
      mv build/sambamba.debug $out/bin
    '';

    buildInputs = [
      bash
      python
      glibc
      dmd
      ldc
      which
      rdmd
      zlib
    ];

    meta = with stdenv.lib; {
      homepage = https://github.com/lomereiter/sambamba/wiki;
      description = "Sambamba is a set of command-line tools for working with SAM/BAM file formats which are used for storing next generation sequencing (NGS) datasets.";
      platforms = platforms.all;
      license = licenses.gpl2;
    };

    enableParallelBuilding = true;
  }