# This file was generated by https://github.com/kamilchm/go2nix v1.3.0
{ stdenv, buildGoPackage, fetchgit, fetchhg, fetchbzr, fetchsvn, makeWrapper
, gzip, gsort, htslib, lumpy, samtools, svtyper, mosdepth }:

buildGoPackage rec {
  name = "smoove-${version}";
  version = "0.2.4";

  goPackagePath = "github.com/brentp/smoove";

  src = fetchgit {
    rev = "v${version}";
    url = "https://github.com/brentp/smoove.git";
    sha256 = "0jyycc3rjy406qkc17pfagy44bnkmgk348plqwqqpcawdpwpj57v";
  };

  postFixup = ''
    wrapProgram "$out/bin/smoove"        \
      --suffix PATH : "${gzip}/bin"      \
      --suffix PATH : "${gsort}/bin"     \
      --suffix PATH : "${htslib}/bin"    \
      --suffix PATH : "${lumpy}/bin"     \
      --suffix PATH : "${samtools}/bin"  \
      --suffix PATH : "${svtyper}/bin"   \
      --suffix PATH : "${mosdepth}/bin"
  '';

  goDeps = ./deps.nix;

  nativeBuildInputs = [
    makeWrapper
  ];

  meta = with lib; {
    homepage = https://github.com/brentp/smoove;
    description = "Wrap existing software and adds some internal read-filtering to simplify calling and genotyping structural variants.";
    platforms = platforms.all;
    license = licenses.asl20;
  };
}