{ stdenv, fetchFromGitHub, ldc
, python3, glibc, which, zlib }:

stdenv.mkDerivation rec {
  version = "0.6.9";
  name = "sambamba-${version}";

  src = fetchFromGitHub {
    owner = "biod";
    repo = "sambamba";
    # Two commits on top of 0.6.9 release to remove undeaD submodule
    rev = "d67cf50280f7c752d815fdb50fc38fb7bb61f2c9";
    sha256 = "1skv12nx84dsxh71ixw605k6pasbjlbwiij2s9382gsw2ya6nhv7";
    fetchSubmodules = true;
  };

  installFlags = [ "prefix=$(out)" ];
  preInstall = ''
    mkdir -p "$out"/bin
  '';

  buildInputs = [
    python3
    glibc
    ldc
    which
    zlib
  ];

  meta = with stdenv.lib; {
    homepage = https://github.com/lomereiter/sambamba/wiki;
    description = "Sambamba is a set of command-line tools for working with SAM/BAM file formats which are used for storing next generation sequencing (NGS) datasets.";
    platforms = platforms.all;
    license = licenses.gpl2;
  };

  enableParallelBuilding = true;
}