{ stdenv, overrideCC, gcc49, fetchurl, makeWrapper, gzip, cmake
, boost, perl, perlPackages, gnuplot }:

# gcc 5.x c++11 requires istream to be explicitly cast to bool

stdenv.mkDerivation rec {
  version = "2.2.2.5_lt";
  name = "meraculous-${version}";

  src = fetchurl {
    url = "mirror://sourceforge/meraculous20/release-${version}.tgz";
    sha256 = "1i0p46aidkqh9ah3ifgj8q70r24bd7c2x0b251fgsggbf1cwzrlb";
  };

  postPatch = ''
    sed -ie '/^set(Boost_USE_STATIC/d' src/c/CMakeLists.txt
  '';

  postInstall = ''
    wrapProgram $out/bin/run_meraculous.sh --prefix PERL5LIB ":" "$PERL5LIB"
  '';

  buildInputs = [
    makeWrapper
    gzip
    cmake
    boost
    perl
    perlPackages.Log4Perl
    gnuplot
  ];

  meta = with stdenv.lib; {
    homepage = http://jgi.doe.gov/data-and-tools/meraculous;
    description = "Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes.";
    platforms = platforms.all;
    license = licenses.bsd3;
  };
}