{ lib, fetchPypi, buildPythonPackage, isPy3k
, cython, setuptools_scm
, dnaio, xopen, pytest, pytest-timeout, sphinx }:

buildPythonPackage rec {
  version = "2.3";
  pname = "cutadapt";

  src = fetchPypi {
    inherit pname version;
    sha256 = "1b4jdq565vwx44azjj7gsaszckzxbgnakpbvi5im4ll1knn69f4q";
  };

  disabled = !isPy3k;

  buildInputs = [ cython setuptools_scm ];
  propagatedBuildInputs = [ dnaio xopen ];
  checkInputs = [ pytest pytest-timeout sphinx ];

  meta = with lib; {
    homepage = "https://cutadapt.readthedocs.io";
    description = "Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.";
    license = licenses.mit;
  };
}