Syzygial/ccpkgs
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  • 169b36cbb4 flake.lock: Update cc-23.05 David Crompton 2024-01-26 11:27:45 -05:00
  • a398cf223f Delayed update... David Crompton 2024-01-26 11:13:07 -05:00
  • 26d6f99ce4 Custom override David Crompton 2023-05-25 12:51:57 -04:00
  • 5e775250ed Numpy Override for Lumpy David Crompton 2023-05-25 12:37:48 -04:00
  • 1e1d2a3800 Set attr in all David Crompton 2023-05-25 12:25:52 -04:00
  • f2f3ad5bc2 Use Legacy Python again? David Crompton 2023-05-25 12:24:09 -04:00
  • 8abb0c9b4c Different Fix? David Crompton 2023-05-25 12:21:06 -04:00
  • 10c16d0fb2 Odd Python2 Dep Issue Fix? David Crompton 2023-05-25 12:18:31 -04:00
  • dc38151cf9 That's why I needed it, riiiight David Crompton 2023-05-25 12:11:24 -04:00
  • 3cd29b31e5 Test: remove libGL Override for Infinite Recursion "Fix" David Crompton 2023-05-25 12:08:11 -04:00
  • 8f36d1fbf5 Revert Package Limitation David Crompton 2023-05-25 12:05:30 -04:00
  • 1bc36febc7 Python2, not just env David Crompton 2023-05-23 14:35:34 -04:00
  • 17d13f17d4 FreeGlut Nolonger FLTK Arg David Crompton 2023-05-23 14:34:10 -04:00
  • a8233a2e83 Add Python2.7 to Permittedinsecurepackages David Crompton 2023-05-23 14:34:02 -04:00
  • 8019407c69 Import lib in changed files David Crompton 2023-05-23 14:28:32 -04:00
  • 016a641c38 stdenv.lib -> lib David Crompton 2023-05-23 14:24:16 -04:00
  • 5c2be8a078 Only Package x86-64 For now David Crompton 2023-05-23 14:16:53 -04:00
  • bfb6f5bf1b Add overlay packages as HydraJobs David Crompton 2023-05-23 13:40:28 -04:00
  • 8b14fe2dbf Update README David Crompton 2023-05-23 13:35:52 -04:00
  • 175d46bdd9 Now Passing David Crompton 2023-05-23 13:15:36 -04:00
  • dcea1444c3 opengl: VirtualGL fixup require basename in library filter cc-20.09 Tyson Whitehead 2021-11-24 17:52:17 -05:00
  • 8348eb7a4b mfix: URL updates Tyson Whitehead 2021-03-16 17:39:23 -04:00
  • 0349b4bb98 opengl: Only apply VirtualGL fixup when we are a runtime dependency Tyson Whitehead 2021-02-25 15:10:46 -05:00
  • c8ef9c9b96 opengl: VirtualGL fixup filename test wasn't on basename Tyson Whitehead 2021-02-25 15:10:03 -05:00
  • c4382fa872 The unpack-channel.nix core function is in flux for 20.09 Tyson Whitehead 2021-02-02 00:19:49 -05:00
  • c44bd5abc3 ovito: Use qt mkDerivation so application is proprely wrapped Tyson Whitehead 2021-02-01 13:10:10 -05:00
  • 95119fbace ovito: Switch from avlib to ffmpeg (avlib is likely going away) Tyson Whitehead 2021-01-31 01:03:37 -05:00
  • 2a26edb361 ovito: Name should be ovito not ovita Tyson Whitehead 2021-01-29 17:36:40 -05:00
  • 7c1d02b108 ovito: 3.3.5 -> 3.4.0 Tyson Whitehead 2021-01-29 14:52:54 -05:00
  • c9c30b98bd smoove: Output is $out and not $bin if outputs hasn't been defined Tyson Whitehead 2021-01-29 12:06:57 -05:00
  • 786d3ba8e8 openslide: python part 1.1.1 -> 1.1.2 (required by newer setuptools) Tyson Whitehead 2021-01-29 11:52:56 -05:00
  • 0f3acdeeea openblas: Upsteam issue breaking scipy not yet pulled (#108709) Tyson Whitehead 2021-01-28 17:56:38 -05:00
  • 1e51762cb0 opengl: Config option now specifies drivers output Tyson Whitehead 2021-01-28 17:05:48 -05:00
  • 8f840d0d6a pythonPackages: Update for python version changes Tyson Whitehead 2021-01-28 16:57:46 -05:00
  • 1616afc212 cloudcompare: Upstream now Tyson Whitehead 2021-01-28 17:10:44 -05:00
  • c84c57e280 Switch to 20.09 upstream Tyson Whitehead 2021-01-26 19:56:54 -05:00
  • 8a98bdc5f7 openfoam: 4.0 -> 8 (using older compiler didn't work with CGAL) Tyson Whitehead 2021-01-26 19:38:07 -05:00
  • 0fb47b7672 opengl: libGL can just be symlinks instead of fake pkgconfig files Tyson Whitehead 2021-01-26 19:34:17 -05:00
  • 8cf6316b8f opengl: Newer fltk doesn't use libGLU_combined hack Tyson Whitehead 2021-01-26 19:33:27 -05:00
  • 533eb308e7 pythonPackages: Update for python version changes Tyson Whitehead 2021-01-28 16:57:00 -05:00
  • 4c6a34535b blast, minia, pythonPackages.vtk: Upstream now Tyson Whitehead 2021-01-21 11:52:46 -05:00
  • f949d4e2b6 temporary: Drop workarounds for previous upstream version Tyson Whitehead 2021-01-26 19:21:00 -05:00
  • a14b35ae83 Switch to 20.03 upstream Tyson Whitehead 2021-01-21 11:36:43 -05:00
  • 400422accd pythonPackages: Update for python version changes Tyson Whitehead 2021-01-28 16:55:15 -05:00
  • ecb268b423 ovito: 2.9.0 -> 3.3.5 (older openssl depedency may be insecure) Tyson Whitehead 2021-01-26 19:28:04 -05:00
  • eed2202981 opengl: Update VirtualGL system (mostly for switch to meson build) Tyson Whitehead 2021-01-20 20:15:12 -05:00
  • 941f347474 openfoam: Version requires GCC 7.x Tyson Whitehead 2021-01-20 19:34:30 -05:00
  • d43c0d3223 cryptominisat, octopus, libxc: Upstream now Tyson Whitehead 2021-01-20 19:18:54 -05:00
  • a2ed61d47b nix: Bring NIX_REMOTE tcp patch up-to-date Tyson Whitehead 2021-01-20 19:20:23 -05:00
  • c6c75bb897 temporary: Drop workarounds for previous upstream version Tyson Whitehead 2021-01-20 19:33:37 -05:00
  • e15bd037d4 Switch to 19.09 upstream Tyson Whitehead 2020-12-22 12:47:37 -05:00
  • ea5b0088cb opengl: Don't wrap shared libraries or anything already wrapped Tyson Whitehead 2021-01-20 19:36:20 -05:00
  • 12593a159a opengl: VirtualGL trailing deliminator issue causing rpath skippage Tyson Whitehead 2020-07-31 11:40:17 -04:00
  • 560abb236e ninja: Ninja issues 1510 patch source update to ninja upstream Tyson Whitehead 2020-03-19 14:08:40 -04:00
  • 218174a96a Upstream dropped unpack-channel binaryCacheURL argument in nix Tyson Whitehead 2020-01-09 11:34:04 -05:00
  • 9d4ffc6b15 mfix: Local copy of sources as S3 authorization times out Tyson Whitehead 2019-12-20 16:35:17 -05:00
  • 15c45abf09 mfix: Initial packaging Tyson Whitehead 2019-12-20 15:42:59 -05:00
  • d6e2d42354 vtk: Include pythong bindings Tyson Whitehead 2019-12-20 15:36:35 -05:00
  • 0bbaae3038 smoove: Initial packaging Tyson Whitehead 2019-11-07 17:27:33 -05:00
  • 3902499aaf svtyper: Initial packaging Tyson Whitehead 2019-11-07 17:26:51 -05:00
  • ded9f94444 gsort: Initial packaging Tyson Whitehead 2019-11-07 17:26:34 -05:00
  • 05a704f989 lumpy: bamkit python files should be in bamkit subdirectory Tyson Whitehead 2019-10-30 13:07:39 -04:00
  • 6fefb5f7c1 octave: Fix abort due to missing gl2ps library (#38459) Tyson Whitehead 2019-07-09 15:39:06 -04:00
  • e3993e3a55 lumpy: Initial packaging Tyson Whitehead 2019-10-29 14:44:58 -04:00
  • d722075b64 samblaster: Initial packaging Tyson Whitehead 2019-10-29 14:44:00 -04:00
  • 1c1b029b58 octopus libxc: Change source as upstream tdft.org has disappeared Tyson Whitehead 2019-09-17 17:06:43 -04:00
  • db8655693e cutadapt: Initial packaging Tyson Whitehead 2019-06-25 11:56:13 -04:00
  • 81f206189a dnaio: Initial packaging Tyson Whitehead 2019-06-25 11:55:47 -04:00
  • db14501e23 xopen: Initial packaging Tyson Whitehead 2019-06-25 11:53:47 -04:00
  • 4d3da4bd51 opengl: VirtualGL use system nvidia libraries /usr/lib(|64)/nvidia Tyson Whitehead 2019-06-13 12:12:25 -04:00
  • 2f169a049e opengl: Accidental double suffix on VirtualGL preload lib Tyson Whitehead 2019-06-06 11:55:10 -04:00
  • d1e33d2509 fastqc: Correct license attribute Tyson Whitehead 2019-06-05 22:56:49 -04:00
  • cac2a63b32 fastqc: Initial packaging Tyson Whitehead 2019-06-05 20:12:39 -04:00
  • 3aeab1dd97 opengl: Use glxgallium Mesa when VirtualGL is not appropriate Tyson Whitehead 2019-06-05 20:07:19 -04:00
  • cd8953a282 opengl: Accidentally left debug dumps in Tyson Whitehead 2019-05-15 12:21:55 -04:00
  • fd773491ac temporary: Drop workarounds for previous upstream version Tyson Whitehead 2019-05-13 16:11:40 -04:00
  • 84f49e7375 Switch to 19.03 upstream Tyson Whitehead 2019-05-13 15:54:15 -04:00
  • 6ecbf29f61 namd: Use upstream git repos for sources and nix dependencies Tyson Whitehead 2019-05-09 13:05:08 -04:00
  • d21031cf2a openfoam: Namespace conflict with point due to newer CGAL library Tyson Whitehead 2019-05-08 13:39:49 -04:00
  • 73d08ba015 sambamba: 0.6.7 -> 0.6.9 (required by newer ldc) Tyson Whitehead 2019-05-07 14:41:30 -04:00
  • eb3a39c3ec opengl: Mimetype no longer detects shared libraries after pie issues Tyson Whitehead 2019-05-03 10:11:39 -04:00
  • 8be0a79790 ovito: Missing include in header (exposed by newer qt moc?) Tyson Whitehead 2019-05-02 11:35:42 -04:00
  • e7f97c0bae minia: Passes -Wno-format so need to disable format hardening Tyson Whitehead 2019-04-30 12:16:21 -04:00
  • 0ff19d8d05 lapack: Make without atlas default as currently broken (#49594) Tyson Whitehead 2019-04-29 17:49:55 -04:00
  • 91cdf647a4 opengl: Update for newer libglvndr setup Tyson Whitehead 2019-04-26 17:41:51 -04:00
  • adaf5a1a03 temporary: Drop workarounds for previous upstream version Tyson Whitehead 2018-11-28 20:10:21 -05:00
  • e20980dd84 Switch to 18.09 upstream Tyson Whitehead 2018-11-28 20:07:44 -05:00
  • d5b35e9d00 sambamba: Upstream github repo owner change Tyson Whitehead 2019-05-02 11:49:17 -04:00
  • 4a2ef9563b octopus: libxc 4.0.4 tarball hash update (notified upstream) Tyson Whitehead 2019-05-02 11:01:55 -04:00
  • c5272a03b8 ghmm: Initial packaging including split off python2 interface Tyson Whitehead 2019-05-02 10:55:02 -04:00
  • 5b96358a18 Filter packages that throw an error when evaluated (disabled python) Tyson Whitehead 2019-05-02 10:51:16 -04:00
  • 7736b409f4 opengl: Do VirtualGL preload conditioning on VGL_DISPLAY Tyson Whitehead 2019-04-12 11:23:38 -04:00
  • 3825783ee5 pybedtools: Disable tests on python3 due to TypeError issue Tyson Whitehead 2019-04-30 16:31:43 -04:00
  • 05b4a13c47 pybedtools: Initial packaging Tyson Whitehead 2019-04-30 15:19:02 -04:00
  • 1965334f5a minia: Add all platforms and enable parallel building Tyson Whitehead 2019-03-15 10:58:52 -04:00
  • 4337c7bae2 minia: Wrong path to licenses attribute Tyson Whitehead 2019-03-15 10:57:52 -04:00
  • 5dac1b30ad minia: Initial packaging Tyson Whitehead 2019-03-15 10:27:20 -04:00
  • 99a1f1b32b igv: Disable LCD sub-pixel rendering as bug gives missing letters Tyson Whitehead 2019-03-13 02:42:11 -04:00
  • c03ec29828 JuliaCall: Update to 0.14 to resolve libjulia.so location issues Tyson Whitehead 2018-11-28 21:59:52 -05:00
  • 5e1a6acb68 rPackages: Implement overlay infrastructure Tyson Whitehead 2018-11-28 21:58:11 -05:00