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c9c30b98bd0e54c6e5d65c5ad8fb1f6a3fa702d6
Commit Graph

83 Commits

Author SHA1 Message Date
Tyson Whitehead
c9c30b98bd smoove: Output is $out and not $bin if outputs hasn't been defined 
Not sure why this worked before. Must be more strict now?
 2021-01-29 15:03:33 -05:00
Tyson Whitehead
786d3ba8e8 openslide: python part 1.1.1 -> 1.1.2 (required by newer setuptools) 2021-01-29 15:02:43 -05:00
Tyson Whitehead
1e51762cb0 opengl: Config option now specifies drivers output 2021-01-29 15:02:43 -05:00
Tyson Whitehead
1616afc212 cloudcompare: Upstream now 2021-01-29 15:02:43 -05:00
Tyson Whitehead
8a98bdc5f7 openfoam: 4.0 -> 8 (using older compiler didn't work with CGAL) 2021-01-29 15:02:43 -05:00
Tyson Whitehead
0fb47b7672 opengl: libGL can just be symlinks instead of fake pkgconfig files 
The disk-cache-key can't use "drivers" as it creates a loop.
 2021-01-28 17:16:11 -05:00
Tyson Whitehead
8cf6316b8f opengl: Newer fltk doesn't use libGLU_combined hack 2021-01-28 17:16:11 -05:00
Tyson Whitehead
4c6a34535b blast, minia, pythonPackages.vtk: Upstream now 2021-01-28 17:16:11 -05:00
Tyson Whitehead
ecb268b423 ovito: 2.9.0 -> 3.3.5 (older openssl depedency may be insecure) 2021-01-28 17:16:11 -05:00
Tyson Whitehead
eed2202981 opengl: Update VirtualGL system (mostly for switch to meson build) 2021-01-28 17:16:11 -05:00
Tyson Whitehead
941f347474 openfoam: Version requires GCC 7.x 2021-01-28 17:16:11 -05:00
Tyson Whitehead
d43c0d3223 cryptominisat, octopus, libxc: Upstream now 2021-01-28 17:16:11 -05:00
Tyson Whitehead
a2ed61d47b nix: Bring NIX_REMOTE tcp patch up-to-date 2021-01-28 17:16:11 -05:00
Tyson Whitehead
ea5b0088cb opengl: Don't wrap shared libraries or anything already wrapped 
Some QT libraries are also executables. Wrapping them breaks
linking against the library.
 2021-01-28 17:16:11 -05:00
Tyson Whitehead
12593a159a opengl: VirtualGL trailing deliminator issue causing rpath skippage 
Bash read returns false if trailing deliminator is not found causing
the while read -d ':' loop to not process the last rpath entry.
 2020-07-31 11:46:52 -04:00
Tyson Whitehead
9d4ffc6b15 mfix: Local copy of sources as S3 authorization times out 2020-01-07 10:12:32 -05:00
Tyson Whitehead
15c45abf09 mfix: Initial packaging 2019-12-20 15:42:59 -05:00
Tyson Whitehead
d6e2d42354 vtk: Include pythong bindings 2019-12-20 15:36:35 -05:00
Tyson Whitehead
0bbaae3038 smoove: Initial packaging 2019-11-08 10:03:51 -05:00
Tyson Whitehead
3902499aaf svtyper: Initial packaging 2019-11-07 17:26:51 -05:00
Tyson Whitehead
ded9f94444 gsort: Initial packaging 2019-11-07 17:26:34 -05:00
Tyson Whitehead
05a704f989 lumpy: bamkit python files should be in bamkit subdirectory 2019-10-30 13:07:39 -04:00
Tyson Whitehead
e3993e3a55 lumpy: Initial packaging 2019-10-29 14:47:21 -04:00
Tyson Whitehead
d722075b64 samblaster: Initial packaging 2019-10-29 14:47:19 -04:00
Tyson Whitehead
1c1b029b58 octopus libxc: Change source as upstream tdft.org has disappeared 2019-09-19 15:25:38 -04:00
Tyson Whitehead
db8655693e cutadapt: Initial packaging 2019-06-25 11:56:13 -04:00
Tyson Whitehead
81f206189a dnaio: Initial packaging 2019-06-25 11:55:47 -04:00
Tyson Whitehead
db14501e23 xopen: Initial packaging 2019-06-25 11:55:34 -04:00
Tyson Whitehead
4d3da4bd51 opengl: VirtualGL use system nvidia libraries /usr/lib(|64)/nvidia 2019-06-13 12:12:25 -04:00
Tyson Whitehead
2f169a049e opengl: Accidental double suffix on VirtualGL preload lib 2019-06-06 11:55:10 -04:00
Tyson Whitehead
d1e33d2509 fastqc: Correct license attribute 2019-06-05 22:56:49 -04:00
Tyson Whitehead
cac2a63b32 fastqc: Initial packaging 2019-06-05 20:12:39 -04:00
Tyson Whitehead
3aeab1dd97 opengl: Use glxgallium Mesa when VirtualGL is not appropriate 2019-06-05 20:11:39 -04:00
Tyson Whitehead
cd8953a282 opengl: Accidentally left debug dumps in 2019-05-15 12:25:48 -04:00
Tyson Whitehead
6ecbf29f61 namd: Use upstream git repos for sources and nix dependencies 2019-05-09 13:05:08 -04:00
Tyson Whitehead
d21031cf2a openfoam: Namespace conflict with point due to newer CGAL library 2019-05-08 13:42:41 -04:00
Tyson Whitehead
73d08ba015 sambamba: 0.6.7 -> 0.6.9 (required by newer ldc) 2019-05-07 14:41:30 -04:00
Tyson Whitehead
eb3a39c3ec opengl: Mimetype no longer detects shared libraries after pie issues 2019-05-03 10:11:39 -04:00
Tyson Whitehead
8be0a79790 ovito: Missing include in header (exposed by newer qt moc?) 2019-05-02 11:54:43 -04:00
Tyson Whitehead
e7f97c0bae minia: Passes -Wno-format so need to disable format hardening 2019-05-02 11:54:43 -04:00
Tyson Whitehead
91cdf647a4 opengl: Update for newer libglvndr setup 2019-05-02 11:54:43 -04:00
Tyson Whitehead
d5b35e9d00 sambamba: Upstream github repo owner change 2019-05-02 11:49:17 -04:00
Tyson Whitehead
4a2ef9563b octopus: libxc 4.0.4 tarball hash update (notified upstream) 2019-05-02 11:01:55 -04:00
Tyson Whitehead
c5272a03b8 ghmm: Initial packaging including split off python2 interface 2019-05-02 10:55:02 -04:00
Tyson Whitehead
7736b409f4 opengl: Do VirtualGL preload conditioning on VGL_DISPLAY 
Preloading is done by doing a binary patch to the library to add it
as a dependency. The 2.3 series of glibc will let this be done with
just a wrapper that calls ld.so and with the --preload option.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
3825783ee5 pybedtools: Disable tests on python3 due to TypeError issue 
Ran small example on website to verify package isn't totally dead.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
05b4a13c47 pybedtools: Initial packaging 2019-04-30 15:24:32 -04:00
Tyson Whitehead
1965334f5a minia: Add all platforms and enable parallel building 2019-03-15 10:58:52 -04:00
Tyson Whitehead
4337c7bae2 minia: Wrong path to licenses attribute 2019-03-15 10:57:52 -04:00
Tyson Whitehead
5dac1b30ad minia: Initial packaging 2019-03-15 10:27:20 -04:00