168 Commits

Author SHA1 Message Date
Tyson Whitehead
58985f7fa4 namd: Switch from custom builder to overloaded stages 2016-11-28 13:39:06 -05:00
Tyson Whitehead
aebc5cb499 namd: Change spacing to reflect nesting level 2016-11-28 12:00:44 -05:00
Tyson Whitehead
c1ff57dde6 namd: No need to delete stuff in build tree as it is thrown away at end 2016-11-28 11:53:52 -05:00
Tyson Whitehead
88e7f84803 namd: Move namd to standard lib/namd and symlink to bin 2016-11-28 11:50:37 -05:00
Tyson Whitehead
0fd01a6fb2 namd: Pass -f to tcsh to not process any rc files (helps nix-shell) 2016-11-28 11:42:08 -05:00
Tyson Whitehead
b8a764d2e8 namd: Include perl in buildInputs to put it in the path 2016-11-28 11:41:47 -05:00
Tyson Whitehead
7d44145df3 namd: Initial NAMD packaging by Pawel 2016-11-28 10:35:56 -05:00
Tyson Whitehead
9dcf69a9e8 Use --file to install directly instead of copying to ~/.nix-defexp 2016-11-21 16:33:52 -05:00
Tyson Whitehead
efb0b213e4 Merge branch 'openfoam' into 'master'
Openfoam expression

This adds an OpenFOAM nix expression.  It

* provides binary wrappers that automatically source the *etc/bashrc* script before running, and
* provides *-mpi wrappers that automatically call the correct mpirun with `-n <num>` set by the partition.

It has been tested on goblin in both MPI and non-MPI mode on the [damBreak example](http://cfd.direct/openfoam/user-guide/damBreak).

See merge request !1
2016-10-27 17:22:46 -04:00
Tyson Whitehead
a90c9e5ee3 openfoam: Add *-mpi wrappers for all bins that use libPstream.so
* Ensure correct mpirun is used and right number of processes
2016-10-27 15:21:59 -04:00
Tyson Whitehead
7a6534cb21 openfoam: Don't package applications directory (it's source) 2016-10-07 16:49:01 -04:00
Tyson Whitehead
96cd6a502e openfoam: Drop unused buildInputs 2016-10-07 16:48:29 -04:00
Tyson Whitehead
ac43be430a openfoam: Initial packaging 2016-10-07 15:53:07 -04:00
Tyson Whitehead
49e7640246 nltk: Initial packaging 2016-10-06 17:21:58 -04:00
Tyson Whitehead
c3ca12cbc0 Update SHARCNET git Nix URLs for creating of Nix group 2016-09-21 13:00:48 -04:00
Tyson Whitehead
b702d55c93 Description of how to use the Nix expressions 2016-05-18 12:24:32 -04:00
Tyson Whitehead
0130a56a01 sumo: Initial packaging 2016-05-17 23:55:47 -04:00
Tyson Whitehead
5b92a21007 cryptominisat: Initial packaging 2016-05-17 17:12:17 -04:00