Syzygial/ccpkgs
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cc-20.09
Commit Graph

91 Commits

Author SHA1 Message Date
Tyson Whitehead
4a2ef9563b octopus: libxc 4.0.4 tarball hash update (notified upstream) 2019-05-02 11:01:55 -04:00
Tyson Whitehead
c5272a03b8 ghmm: Initial packaging including split off python2 interface 2019-05-02 10:55:02 -04:00
Tyson Whitehead
7736b409f4 opengl: Do VirtualGL preload conditioning on VGL_DISPLAY 
Preloading is done by doing a binary patch to the library to add it
as a dependency. The 2.3 series of glibc will let this be done with
just a wrapper that calls ld.so and with the --preload option.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
3825783ee5 pybedtools: Disable tests on python3 due to TypeError issue 
Ran small example on website to verify package isn't totally dead.
 2019-04-30 16:33:59 -04:00
Tyson Whitehead
05b4a13c47 pybedtools: Initial packaging 2019-04-30 15:24:32 -04:00
Tyson Whitehead
1965334f5a minia: Add all platforms and enable parallel building 2019-03-15 10:58:52 -04:00
Tyson Whitehead
4337c7bae2 minia: Wrong path to licenses attribute 2019-03-15 10:57:52 -04:00
Tyson Whitehead
5dac1b30ad minia: Initial packaging 2019-03-15 10:27:20 -04:00
Tyson Whitehead
5e1a6acb68 rPackages: Implement overlay infrastructure 2018-11-28 23:07:34 -05:00
Tyson Whitehead
d0a6a1bf3f openslide: Python portion into pythonPackages infrastructure 2018-08-10 17:43:23 -04:00
Tyson Whitehead
8f5981df31 pythonPackages: Implement overlay infrastructure 
Accumulate overlays in pythonOverrides attribute and then apply
them just once to base python packages.

https://github.com/NixOS/nixpkgs/issues/44426
 2018-08-10 17:43:23 -04:00
Tyson Whitehead
444bcbe26f pkgs: Do all version requirements as overrides in all-packages 2018-07-18 13:21:33 -04:00
Tyson Whitehead
6118f8b275 cloudcompare: Initial packaging 2018-07-17 00:17:52 -04:00
Tyson Whitehead
6971b0766b opengl: Rename of hook to more accurate insert-virtualgl 2018-07-14 10:43:17 -04:00
Tyson Whitehead
21d87c1e83 opengl: Comments and layout improvements 2018-07-14 10:42:00 -04:00
Tyson Whitehead
04de2db1d1 opengl: Disable pipefail to allow early out 
Prior operator || and putting builtins subshells workaround didn't
work with in all build shells.
 2018-07-14 10:39:25 -04:00
Tyson Whitehead
886d1e23da opengl: callPackages overrides inner overide functions 
This behaviour is suitable for initial declarations, but not for
re-exporting overriden pacakges.  The outer layer is about the
wrapper and not something that we want independtly expose anyway.
 2018-07-13 12:29:47 -04:00
Tyson Whitehead
8db76b00da ovito: Initial packaging 2018-07-12 01:29:25 -04:00
Tyson Whitehead
115ac559ec opengl: Automatically insert virtualgl into opengl executables 2018-07-12 00:28:01 -04:00
Tyson Whitehead
fb163ecb85 nix: Should be pulling config from /nix/etc/nix and not /etc/nix 2018-07-11 16:39:44 -04:00
Tyson Whitehead
bcbb1ef4fb sambamba: Upgrade to 0.6.7 and compile with upstream ldc 
Fixes new compilation issues with tupple operator being dropped
 2018-06-27 14:19:23 -04:00
Tyson Whitehead
c72ea282b4 blast: Requires previous version of boost 2018-06-25 15:48:08 -04:00
Tyson Whitehead
01a6ed3f22 nix: Update patches for 2.0 
* Drop stat patch as was accepted upstream.
* NIX_REMOTE scheme is now URI based tcp://host:port
 2018-06-25 15:45:44 -04:00
Armin Sobhani
fde6c31445 add idba bioinformatics package 2018-06-25 15:38:22 -04:00
Tyson Whitehead
9ebec6056b Set SKIP_CC_CVMFS=1 in nix-shell pure mode to avoid CVMFS pollution 2018-04-25 14:07:28 -04:00
Tyson Whitehead
b3a150a471 blast: Package official ncbi-blast package 
Based on initial work by Armin.
 2018-04-24 16:46:55 -04:00
Tyson Whitehead
1c1f16a2b3 octopus: Switch to new version structure 2018-02-07 13:39:27 -05:00
Tyson Whitehead
bb7076d9f0 openfoam: Update hash and re-enable 2018-02-07 13:38:09 -05:00
Tyson Whitehead
6cb654e501 octopus: Initial packaging 2018-02-06 22:10:02 -05:00
Tyson Whitehead
820719fb02 nix: Patch to support NIX_DAEMON=<addr>:<port> 2018-01-23 23:46:45 -05:00
Tyson Whitehead
1d156fc470 Make super available in all-*.nix for override* use 2018-01-23 23:37:03 -05:00
Tyson Whitehead
e1171b5ed1 firedrake meraculous openfoam sumo: Disable broken packages 2018-01-20 15:30:12 -05:00
Tyson Whitehead
1825738822 sambamba: Add package from asobhani/nix-bioinfo-pkgs-sharcnet 2018-01-19 12:08:53 -05:00
Tyson Whitehead
38d4b97ead namd: Convert to new overlay system 2018-01-19 02:14:59 -05:00
Tyson Whitehead
e44edd0230 sumo: Convert to new overlay system 2018-01-19 02:14:59 -05:00
Tyson Whitehead
fa856eb582 openslide: Convert to new overlay system 2018-01-19 02:14:59 -05:00
Tyson Whitehead
ad0a5b2336 openfoam: Convert to new overlay system 2018-01-19 02:14:59 -05:00
Tyson Whitehead
99a331d613 meraculous: Convert to new overlay system 2018-01-18 01:00:03 -05:00
Tyson Whitehead
8dda256fad firedrake: Moved to new overlay system and shared sub-scope 
Firedrake contains a ton of inter-connected dependencies, many of
which are either firedrake specific or forked versions of upstream
packages.  Cleaner to create a firedrake sub-scope for all these.
 2018-01-18 00:59:30 -05:00
Tyson Whitehead
d4dd6ff700 cryptominisat: Convert to new overlays system 2018-01-18 00:58:53 -05:00
Tyson Whitehead
24255eab8d Overlays based framework for extending nixpkgs 2018-01-18 00:58:14 -05:00