Tyson Whitehead
95119fbace
ovito: Switch from avlib to ffmpeg (avlib is likely going away)
2021-01-31 01:03:37 -05:00
Tyson Whitehead
1616afc212
cloudcompare: Upstream now
2021-01-29 15:02:43 -05:00
Tyson Whitehead
8a98bdc5f7
openfoam: 4.0 -> 8 (using older compiler didn't work with CGAL)
2021-01-29 15:02:43 -05:00
Tyson Whitehead
4c6a34535b
blast, minia, pythonPackages.vtk: Upstream now
2021-01-28 17:16:11 -05:00
Tyson Whitehead
ecb268b423
ovito: 2.9.0 -> 3.3.5 (older openssl depedency may be insecure)
2021-01-28 17:16:11 -05:00
Tyson Whitehead
941f347474
openfoam: Version requires GCC 7.x
2021-01-28 17:16:11 -05:00
Tyson Whitehead
d43c0d3223
cryptominisat, octopus, libxc: Upstream now
2021-01-28 17:16:11 -05:00
Tyson Whitehead
15c45abf09
mfix: Initial packaging
2019-12-20 15:42:59 -05:00
Tyson Whitehead
0bbaae3038
smoove: Initial packaging
2019-11-08 10:03:51 -05:00
Tyson Whitehead
3902499aaf
svtyper: Initial packaging
2019-11-07 17:26:51 -05:00
Tyson Whitehead
ded9f94444
gsort: Initial packaging
2019-11-07 17:26:34 -05:00
Tyson Whitehead
e3993e3a55
lumpy: Initial packaging
2019-10-29 14:47:21 -04:00
Tyson Whitehead
d722075b64
samblaster: Initial packaging
2019-10-29 14:47:19 -04:00
Tyson Whitehead
cac2a63b32
fastqc: Initial packaging
2019-06-05 20:12:39 -04:00
Tyson Whitehead
3aeab1dd97
opengl: Use glxgallium Mesa when VirtualGL is not appropriate
2019-06-05 20:11:39 -04:00
Tyson Whitehead
d21031cf2a
openfoam: Namespace conflict with point due to newer CGAL library
2019-05-08 13:42:41 -04:00
Tyson Whitehead
8be0a79790
ovito: Missing include in header (exposed by newer qt moc?)
2019-05-02 11:54:43 -04:00
Tyson Whitehead
91cdf647a4
opengl: Update for newer libglvndr setup
2019-05-02 11:54:43 -04:00
Tyson Whitehead
c5272a03b8
ghmm: Initial packaging including split off python2 interface
2019-05-02 10:55:02 -04:00
Tyson Whitehead
5dac1b30ad
minia: Initial packaging
2019-03-15 10:27:20 -04:00
Tyson Whitehead
5e1a6acb68
rPackages: Implement overlay infrastructure
2018-11-28 23:07:34 -05:00
Tyson Whitehead
d0a6a1bf3f
openslide: Python portion into pythonPackages infrastructure
2018-08-10 17:43:23 -04:00
Tyson Whitehead
8f5981df31
pythonPackages: Implement overlay infrastructure
...
Accumulate overlays in pythonOverrides attribute and then apply
them just once to base python packages.
https://github.com/NixOS/nixpkgs/issues/44426
2018-08-10 17:43:23 -04:00
Tyson Whitehead
444bcbe26f
pkgs: Do all version requirements as overrides in all-packages
2018-07-18 13:21:33 -04:00
Tyson Whitehead
6118f8b275
cloudcompare: Initial packaging
2018-07-17 00:17:52 -04:00
Tyson Whitehead
886d1e23da
opengl: callPackages overrides inner overide functions
...
This behaviour is suitable for initial declarations, but not for
re-exporting overriden pacakges. The outer layer is about the
wrapper and not something that we want independtly expose anyway.
2018-07-13 12:29:47 -04:00
Tyson Whitehead
8db76b00da
ovito: Initial packaging
2018-07-12 01:29:25 -04:00
Tyson Whitehead
115ac559ec
opengl: Automatically insert virtualgl into opengl executables
2018-07-12 00:28:01 -04:00
Tyson Whitehead
fb163ecb85
nix: Should be pulling config from /nix/etc/nix and not /etc/nix
2018-07-11 16:39:44 -04:00
Tyson Whitehead
bcbb1ef4fb
sambamba: Upgrade to 0.6.7 and compile with upstream ldc
...
Fixes new compilation issues with tupple operator being dropped
2018-06-27 14:19:23 -04:00
Tyson Whitehead
c72ea282b4
blast: Requires previous version of boost
2018-06-25 15:48:08 -04:00
Armin Sobhani
fde6c31445
add idba bioinformatics package
2018-06-25 15:38:22 -04:00
Tyson Whitehead
9ebec6056b
Set SKIP_CC_CVMFS=1 in nix-shell pure mode to avoid CVMFS pollution
2018-04-25 14:07:28 -04:00
Tyson Whitehead
b3a150a471
blast: Package official ncbi-blast package
...
Based on initial work by Armin.
2018-04-24 16:46:55 -04:00
Tyson Whitehead
1c1f16a2b3
octopus: Switch to new version structure
2018-02-07 13:39:27 -05:00
Tyson Whitehead
bb7076d9f0
openfoam: Update hash and re-enable
2018-02-07 13:38:09 -05:00
Tyson Whitehead
6cb654e501
octopus: Initial packaging
2018-02-06 22:10:02 -05:00
Tyson Whitehead
820719fb02
nix: Patch to support NIX_DAEMON=<addr>:<port>
2018-01-23 23:46:45 -05:00
Tyson Whitehead
1d156fc470
Make super available in all-*.nix for override* use
2018-01-23 23:37:03 -05:00
Tyson Whitehead
e1171b5ed1
firedrake meraculous openfoam sumo: Disable broken packages
2018-01-20 15:30:12 -05:00
Tyson Whitehead
1825738822
sambamba: Add package from asobhani/nix-bioinfo-pkgs-sharcnet
2018-01-19 12:08:53 -05:00
Tyson Whitehead
38d4b97ead
namd: Convert to new overlay system
2018-01-19 02:14:59 -05:00
Tyson Whitehead
e44edd0230
sumo: Convert to new overlay system
2018-01-19 02:14:59 -05:00
Tyson Whitehead
fa856eb582
openslide: Convert to new overlay system
2018-01-19 02:14:59 -05:00
Tyson Whitehead
ad0a5b2336
openfoam: Convert to new overlay system
2018-01-19 02:14:59 -05:00
Tyson Whitehead
99a331d613
meraculous: Convert to new overlay system
2018-01-18 01:00:03 -05:00
Tyson Whitehead
8dda256fad
firedrake: Moved to new overlay system and shared sub-scope
...
Firedrake contains a ton of inter-connected dependencies, many of
which are either firedrake specific or forked versions of upstream
packages. Cleaner to create a firedrake sub-scope for all these.
2018-01-18 00:59:30 -05:00
Tyson Whitehead
d4dd6ff700
cryptominisat: Convert to new overlays system
2018-01-18 00:58:53 -05:00
Tyson Whitehead
24255eab8d
Overlays based framework for extending nixpkgs
2018-01-18 00:58:14 -05:00
