From ded9f9444472f4fd2809d258a73cb103099f7fe5 Mon Sep 17 00:00:00 2001
From: Tyson Whitehead <twhitehead@gmail.com>
Date: Thu, 7 Nov 2019 17:26:34 -0500
Subject: [PATCH] gsort: Initial packaging

---
 pkgs/all-packages.nix  |  2 ++
 pkgs/gsort/default.nix | 24 +++++++++++++++++++++
 pkgs/gsort/deps.nix    | 48 ++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 74 insertions(+)
 create mode 100644 pkgs/gsort/default.nix
 create mode 100644 pkgs/gsort/deps.nix

diff --git a/pkgs/all-packages.nix b/pkgs/all-packages.nix
index c095716..1ed23f8 100644
--- a/pkgs/all-packages.nix
+++ b/pkgs/all-packages.nix
@@ -19,6 +19,8 @@ self: super: pkgs: with pkgs; {
 
   ghmm = callPackage ./ghmm { };
 
+  gsort = callPackage ./gsort { };
+
   inherit (callPackages ./octopus/libxc.nix { }) libxc301 libxc404;
   libxc3 = libxc301;
   libxc4 = libxc404;
diff --git a/pkgs/gsort/default.nix b/pkgs/gsort/default.nix
new file mode 100644
index 0000000..1c53846
--- /dev/null
+++ b/pkgs/gsort/default.nix
@@ -0,0 +1,24 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.3.0
+{ stdenv, buildGoPackage, fetchgit, fetchhg, fetchbzr, fetchsvn }:
+
+buildGoPackage rec {
+  name = "gsort-${version}";
+  version = "0.1.2";
+
+  goPackagePath = "github.com/brentp/gsort";
+
+  src = fetchgit {
+    rev = "v${version}";
+    url = "https://github.com/brentp/gsort.git";
+    sha256 = "1l65f8dn0d2jdk1x8bz3p03ia146rlzjflmz4rdzw8nax0kc2n6w";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/brentp/gsort;
+    description = "A tool to sort genomic files according to a genomefile.";
+    platforms = platforms.all;
+    license = licenses.mit;
+  };
+}
diff --git a/pkgs/gsort/deps.nix b/pkgs/gsort/deps.nix
new file mode 100644
index 0000000..c2ccc5b
--- /dev/null
+++ b/pkgs/gsort/deps.nix
@@ -0,0 +1,48 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.3.0
+[
+  {
+    goPackagePath = "github.com/alexflint/go-arg";
+    fetch = {
+      type = "git";
+      url = "https://github.com/alexflint/go-arg";
+      rev = "c0c7a3ba8a1854cd85e65cca4f0e2028698a0738";
+      sha256 = "19vcwh799521rvs4cyplkmw5jw07xqrmvxicf1x57mqgg4y4rapx";
+    };
+  }
+  {
+    goPackagePath = "github.com/brentp/xopen";
+    fetch = {
+      type = "git";
+      url = "https://github.com/brentp/xopen";
+      rev = "111b45cadc7d8be411420143ce0873a889c90227";
+      sha256 = "027nzdcxm1nylj1h25085k1xyz430m7g2qb3ni7j45jviypsffxw";
+    };
+  }
+  {
+    goPackagePath = "github.com/gogetdata/ggd-utils";
+    fetch = {
+      type = "git";
+      url = "https://github.com/gogetdata/ggd-utils";
+      rev = "8f15d3f0e0fe269cd980cf82489ecbd2e6bee2a8";
+      sha256 = "0m0258ylaklab72d4ayiiv4vlfb8yz00np9k5f0axqjkcz0ppwg3";
+    };
+  }
+  {
+    goPackagePath = "github.com/klauspost/compress";
+    fetch = {
+      type = "git";
+      url = "https://github.com/klauspost/compress";
+      rev = "16a4d3d7137cdefd94d420f22b5c20260674b95c";
+      sha256 = "00dy0xr8hyr8l4215kcaqkf232vrrxwrdkaidapnxg77gvd4lpb7";
+    };
+  }
+  {
+    goPackagePath = "github.com/pkg/errors";
+    fetch = {
+      type = "git";
+      url = "https://github.com/pkg/errors";
+      rev = "27936f6d90f9c8e1145f11ed52ffffbfdb9e0af7";
+      sha256 = "0yzmgi6g4ak4q8y7w6x0n5cbinlcn8yc3gwgzy4yck00qdn25d6y";
+    };
+  }
+]