ghmm: Initial packaging including split off python2 interface

2019-05-02 10:55:02 -04:00
parent 5b96358a18
commit c5272a03b8
4 changed files with 120 additions and 0 deletions
--- a/pkgs/ghmm/static-lib-for-tools.patch
+++ b/pkgs/ghmm/static-lib-for-tools.patch
@@ -0,0 +1,60 @@
+--- ghmm-r2341/ghmm/Makefile.am	1969-12-31 19:00:01.000000000 -0500
+++ ghmm-r2341/ghmm/Makefile.am_	2019-04-30 17:11:30.975676919 -0400
+@@ -128,6 +128,57 @@
+ 		    block_compression.c block_compression.h
+ 
+ 
+noinst_LIBRARIES = libghmm.a
+
+libghmm_a_CFLAGS = $(AM_CFLAGS)
+libghmm_a_SOURCES= ghmm.h \
+		   ghmmconfig.h \
+                   rng.c rng.h \
+                   randvar.c randvar.h \
+                   matrixop.c matrixop.h \
+                   gauss_tail.c \
+                   mes.c mes.h \
+                   ghmm_internals.c ghmm_internals.h \
+                   mprintf.c mprintf.h \
+                   vector.c vector.h \
+                   matrix.c  matrix.h \
+                   scanner.c scanner.h \
+                   linkedlist.c \
+                   sequence.c sequence.h \
+                   psequence.c psequence.h \
+                   xmlreader.c xmlreader.h \
+                   xmlwriter.c xmlwriter.h \
+                   model.c model.h \
+                   foba.c foba.h \
+                   viterbi.c viterbi.h \
+                   reestimate.c reestimate.h \
+                   gradescent.c gradescent.h \
+                   kbest.c kbest.h \
+                   discrime.c discrime.h \
+                   modelutil.c \
+                   cluster.c cluster.h \
+                   root_finder.c \
+                   smodel.c smodel.h \
+                   sfoba.c sfoba.h \
+                   sviterbi.c sviterbi.h \
+                   sreestimate.c sreestimate.h \
+                   scluster.c scluster.h \
+                   sgenerate.c sgenerate.h \
+                   smixturehmm.c smixturehmm.h \
+                   smap_classify.c smap_classify.h \
+                   sdmodel.c sdmodel.h \
+                   sdfoba.c sdfoba.h \
+                   sdviterbi.c \
+                   pmodel.c pmodel.h \
+                   pviterbi.c pviterbi.h \
+                   pviterbi_propagate.c pviterbi_propagate.h \
+                   fbgibbs.c fbgibbs.h \
+                   cfbgibbs.c cfbgibbs.h \
+		   bayesian_hmm.c bayesian_hmm.h \
+		   continuous_fbgibbs.c continuous_fbgibbs.h \
+		   block_compression.c block_compression.h
+
+
+ pkginclude_HEADERS = ghmm.h \
+ 		  ghmmconfig.h \
+                   sequence.h \