Numpy Override for Lumpy

2023-05-25 12:37:48 -04:00
parent 1e1d2a3800
commit 5e775250ed
2 changed files with 21 additions and 5 deletions
--- a/pkgs/lumpy.nix
+++ b/pkgs/lumpy.nix
@@ -1,8 +1,19 @@
 { stdenv, lib, fetchFromGitHub, which, autoconf, automake
 , zlib, curl
-, python, python2Packages, hexdump, sambamba, samblaster, samtools }:
-
-stdenv.mkDerivation rec {
+, python2, hexdump, sambamba, samblaster, samtools }: let
+  python = python2.override {
+    packageOverrides = final: prev: {
+      numpy = prev.numpy.overridePythonAttrs(old: rec {
+        version = "1.16.6";
+        src = fetchPypi {
+          inherit pname version;
+          extension = "zip";
+          sha256 = "e5cf3fdf13401885e8eea8170624ec96225e2174eb0c611c6f26dd33b489e3ff";
+        };
+      });
+    };
+  };
+in stdenv.mkDerivation rec {
  version = "0.3.0";
  name = "lumpy-${version}";

@@ -39,7 +50,12 @@ stdenv.mkDerivation rec {
    automake
    zlib
    curl
-    (python.withPackages (packages: with packages; [ numpy pysam ]))
+    (python.withPackages (packages: with packages;
+      [
+        numpy
+        pysam
+      ]
+    ))
    hexdump
    sambamba
    samblaster