From 5dac1b30ad526e29c208230dbede3311c770cfe4 Mon Sep 17 00:00:00 2001
From: Tyson Whitehead <twhitehead@gmail.com>
Date: Fri, 15 Mar 2019 10:27:20 -0400
Subject: [PATCH] minia: Initial packaging

---
 pkgs/all-packages.nix |  2 ++
 pkgs/minia.nix        | 25 +++++++++++++++++++++++++
 2 files changed, 27 insertions(+)
 create mode 100644 pkgs/minia.nix

diff --git a/pkgs/all-packages.nix b/pkgs/all-packages.nix
index 9e9b3d7..f5933e7 100644
--- a/pkgs/all-packages.nix
+++ b/pkgs/all-packages.nix
@@ -22,6 +22,8 @@ self: super: pkgs: with pkgs; {
 
   #meraculous = callPackage ./meraculous.nix { let stdenv49 = overrideCC stdenv gcc49; in stdenv = stdenv49; boost = boost159.override { stdenv = stdenv49 }; };
 
+  minia = callPackage ./minia.nix { };
+
   inherit (callPackage ./opengl/default.nix { inherit super; }) mesa_noglu;
 
   inherit (callPackages ./octopus/octopus.nix { stdenv = overrideCC stdenv gcc5; gfortran = gfortran5; }) octopus72;
diff --git a/pkgs/minia.nix b/pkgs/minia.nix
new file mode 100644
index 0000000..aa564ae
--- /dev/null
+++ b/pkgs/minia.nix
@@ -0,0 +1,25 @@
+{ stdenv, fetchFromGitHub, cmake, zlib }:
+
+stdenv.mkDerivation rec {
+  name = "minia-${version}";
+  version = "3.2.0";
+
+  src = fetchFromGitHub {
+    owner = "GATB";
+    repo = "minia";
+    fetchSubmodules = true;
+    rev = "v${version}";
+    sha256 = "1kziky9hgys3fp8891vx2hskwg7zw49fbnq9zvc7pwmc7qskasli";
+  };
+
+  buildInputs = [
+    cmake
+    zlib
+  ];
+
+  meta = with stdenv.licenses; {
+    description = "A short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.";
+    homepage = https://github.com/GATB/minia;
+    license = gpl3;
+  };
+}