sambamba: Add package from asobhani/nix-bioinfo-pkgs-sharcnet

pkgs/sambamba/ldc.nix

@@ -0,0 +1,57 @@
+{ stdenv, fetchFromGitHub
+, cmake, dmd, cacert, openssl, libconfig, libedit, zlib, libxml2, curl, llvm }:
+
+
+stdenv.mkDerivation rec {
+  version = "1.2.0";
+  name = "ldc-${version}";
+
+  src = fetchFromGitHub {
+    owner = "ldc-developers";
+    repo = "ldc";
+    rev = "e229b1d3810b4880440810c6ca0c23a762ec49cb";
+    sha256 = "0r73vdafmmd6nlxhh1wp3sz9ymni5c721svmbz23l3i0wjlc72ga";
+    fetchSubmodules = true;
+  };
+
+#  src = fetchgit {
+#    url = "https://github.com/ldc-developers/ldc.git";
+#    rev = "refs/tags/v${version}";
+#    sha256 = "12xbzc9b0hhgda8n0125yn4g545qpazhfpv8hjr26pc8qjg9rlq4";
+#    fetchSubmodules = true;
+#  };
+
+#  src = fetchurl {
+#    url = "https://github.com/ldc-developers/ldc/archive/v${version}.tar.gz";
+#    sha256 = "0plgvy9nybc4p41xx9rzrdlhxphbx2sx0sgj4xgg6ak1vac519sa";
+#  };
+
+#  postPatch = ''
+#    sed -i 's:bits/mathdef.h:math.h:' dmd2/root/port.c
+#    sed -i 's/::isnan/std::isnan/' dmd2/root/port.c
+#    sed -i 's/::isinf/std::isinf/' dmd2/root/port.c
+#  '';
+
+  buildInputs = [
+    cmake
+    dmd
+    cacert
+    openssl
+    libconfig
+    libedit
+    zlib
+    libxml2
+    curl
+    llvm
+  ];
+
+  enableParallelBuilding = true;
+
+#  cmakeFlags = [
+#    "-DCMAKE_BUILD_TYPE=Release"
+#    "-DCMAKE_CXX_FLAGS_RELEASE=-std=c++11"
+#    "-DLLVM_ROOT_DIR=${llvm}"
+#    "-DCMAKE_C_COMPILER=${gcc5}/bin/cc"
+#    "-DCMAKE_CXX_COMPILER=${gcc5}/bin/g++"
+#  ];
+}