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lumpy: bamkit python files should be in bamkit subdirectory

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Tyson Whitehead
2019-10-30 13:07:39 -04:00
parent 6fefb5f7c1
commit 05a704f989
1 changed files with 2 additions and 2 deletions
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pkgs/lumpy.nix
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@@ -20,14 +20,14 @@ stdenv.mkDerivation rec {
cp -r bin "$out" cp -r bin "$out"
substituteInPlace "$out/bin/lumpyexpress.config" \ substituteInPlace "$out/bin/lumpyexpress.config" \
--replace "$PWD/" "$out" --replace "$PWD/" "$out"
mkdir -p "$out/lib/lumpy" mkdir -p "$out/lib/lumpy/bamkit"
for script in \ for script in \
pairend_distro.py \ pairend_distro.py \
bamkit/bamgroupreads.py \ bamkit/bamgroupreads.py \
bamkit/bamfilterrg.py \ bamkit/bamfilterrg.py \
bamkit/bamlibs.py bamkit/bamlibs.py
do do
cp "scripts/$script" "$out/lib/lumpy" cp "scripts/$script" "$out/lib/lumpy/$script"
substituteInPlace "$out/bin/lumpyexpress.config" \ substituteInPlace "$out/bin/lumpyexpress.config" \
--replace "$out/scripts/$script" "$out/lib/lumpy/$script" --replace "$out/scripts/$script" "$out/lib/lumpy/$script"
done done