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24
lisp/hoc-mode.el
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24
lisp/hoc-mode.el
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;;; hoc-mode.el -- mode for editing NEURON hox files
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;; (setq hoc-mode-keywords "proc\\|objref\\|create\\|public\\|begintemplate\\|endtemplate\\|access\\|if\\|for")
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(setq hoc-mode-highlights
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'(
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( "proc\\|objref\\|create\\|public\\|begintemplate\\|endtemplate\\|access\\|if\\|for" . font-lock-keyword-face)
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( "[a-z0-9A-Z_]+?[ \n\t]*\\((\\)" . font-lock-function-name-face)
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( "//.+" . font-lock-comment-face)
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( "/\*" . font-lock-comment-start-skip)
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( "\*/" . font-lock-comment-end-skip)
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)
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)
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(define-derived-mode hoc-mode
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prog-mode "hoc"
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"Major mode for NEURON Hoc."
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(setq comment-start "//")
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(setq font-lock-defaults '(hoc-mode-highlights))
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)
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(provide 'hoc-mode)
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;;; hoc-mode.el ends here
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79
lisp/nmodl.el
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79
lisp/nmodl.el
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(defvar nmodl-mode-hook nil)
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(defvar wpdl-mode-map
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(let ((map (make-keymap)))
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; (define-key map "\C-j" 'newline-and-indent)
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map)
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"Keymap for NMODL major mode")
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;;;###autoload
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(add-to-list 'auto-mode-alist '("\\.mod\\'" . nmodl-mode))
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(setq nmodl-keywords
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'(
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"NEURON"
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"UNITS"
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"PARAMETER"
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"ASSIGNED"
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"STATE"
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"INITIAL"
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"BREAKPOINT"
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"DERIVATIVE"
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"PROCEDURE"
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))
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(setq nmodl-neuron-keywords
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'(
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"TITLE"
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"SUFFIX"
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"POINT_PROCESS"
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"RANGE"
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"GLOBAL"
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"POINTER"
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"BBCOREPOINTER"
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"USEION"
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"NONSPECIFIC_CURRENT"
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"SOLVE"
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"METHOD"
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))
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(defvar nmodl-font-lock-keywords
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`(
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,(regexp-opt nmodl-keywords t) . 'font-lock-keyword-face
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)
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"Minimal highlighting expressions for NMODL mode")
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(setq nmodl-font-lock-keywords
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`(
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(,(regexp-opt nmodl-keywords t) . 'font-lock-keyword-face)
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(,(regexp-opt nmodl-neuron-keywords t) . 'font-lock-constant-face)
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("^[[:space:]]*\\([[:alpha:]][[:alnum:]_]*\\)" . 'font-lock-variable-name-face)
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))
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(setq nmodl-syntax-rules
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(syntax-propertize-rules
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("TITLE\\([^\n]\\)[^\n]*\\(\n\\)" (1 "|") (2 "|"))
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("\\<\\(COMMENT\\)\\>" (1 "<"))
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("\\<ENDCOMMEN\\(T\\)\\>" (1 ">"))
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("^[^:\n]*\\(:\\)[^\n]*\\(\n\\)" (1 "!") (2 "!"))
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("\\({\\)" (1 "("))
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("\\(}\\)" (1 ")"))
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))
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(defun nmodl-indent ()
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(indent-relative-first-indent-point)
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)
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(defun nmodl-mode ()
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"Major mode for editing Workflow Process Description Language files"
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(interactive)
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(kill-all-local-variables)
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(setq-local font-lock-defaults '(nmodl-font-lock-keywords))
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(setq-local syntax-propertize-function nmodl-syntax-rules)
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(setq-local c-syntactic-indentation t)
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(setq-local indent-line-function 'nmodl-indent)
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;; (use-local-map wpdl-mode-map)
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(setq major-mode 'nmodl-mode)
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(setq mode-name "NMODL")
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(run-hooks 'nmodl-mode-hook))
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180
lisp/ob-manim.el
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180
lisp/ob-manim.el
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;;; ob-manim.el --- org-babel functions for manim evaluation
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;; Copyright (C) David Crompton
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;; Author: David Crompton
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;; Keywords: manim, python, literate programming, reproducible research
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;; Homepage: https://orgmode.org
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;; Version: 0.01
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;;; License:
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;; This program is free software; you can redistribute it and/or modify
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;; it under the terms of the GNU General Public License as published by
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;; the Free Software Foundation; either version 3, or (at your option)
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;; any later version.
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;;
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;; This program is distributed in the hope that it will be useful,
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
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;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;; GNU General Public License for more details.
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;;
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;; You should have received a copy of the GNU General Public License
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;; along with GNU Emacs; see the file COPYING. If not, write to the
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;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
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;; Boston, MA 02110-1301, USA.
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;;; Commentary:
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;; This file is not intended to ever be loaded by org-babel, rather it is a
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;; manim for use in adding new language support to Org-babel. Good first
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;; steps are to copy this file to a file named by the language you are adding,
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;; and then use `query-replace' to replace all strings of "manim" in this
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;; file with the name of your new language.
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;; After the `query-replace' step, it is recommended to load the file and
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;; register it to org-babel either via the customize menu, or by evaluating the
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;; line: (add-to-list 'org-babel-load-languages '(manim . t)) where
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;; `manim' should have been replaced by the name of the language you are
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;; implementing (note that this applies to all occurrences of 'manim' in this
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;; file).
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;; After that continue by creating a simple code block that looks like e.g.
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;;
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;; #+begin_src manim
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;; test
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;; #+end_src
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;; Finally you can use `edebug' to instrumentalize
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;; `org-babel-expand-body:manim' and continue to evaluate the code block. You
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;; try to add header keywords and change the body of the code block and
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;; reevaluate the code block to observe how things get handled.
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;;
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;; If you have questions as to any of the portions of the file defined
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;; below please look to existing language support for guidance.
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;;
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;; If you are planning on adding a language to org-babel we would ask
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;; that if possible you fill out the FSF copyright assignment form
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;; available at https://orgmode.org/request-assign-future.txt as this
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;; will make it possible to include your language support in the core
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;; of Org-mode, otherwise unassigned language support files can still
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;; be included in the contrib/ directory of the Org-mode repository.
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;;; Requirements:
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;; Use this section to list the requirements of this language. Most
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;; languages will require that at least the language be installed on
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;; the user's system, and the Emacs major mode relevant to the
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;; language be installed as well.
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;;; Code:
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(require 'ob)
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(require 'ob-ref)
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(require 'ob-comint)
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(require 'ob-eval)
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;; possibly require modes required for your language
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;; optionally define a file extension for this language
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(add-to-list 'org-babel-tangle-lang-exts '("manim" . "tmp"))
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;; optionally declare default header arguments for this language
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(defvar org-babel-default-header-args:manim '())
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;; This function expands the body of a source code block by doing things like
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;; prepending argument definitions to the body, it should be called by the
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;; `org-babel-execute:manim' function below. Variables get concatenated in
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;; the `mapconcat' form, therefore to change the formatting you can edit the
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;; `format' form.
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(defun org-babel-expand-body:manim (body params &optional processed-params)
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"Expand BODY according to PARAMS, return the expanded body."
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(require 'inf-manim nil t)
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(let ((vars (org-babel--get-vars (or processed-params (org-babel-process-params params)))))
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(concat
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(mapconcat ;; define any variables
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(lambda (pair)
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(format "%s=%S"
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(car pair) (org-babel-manim-var-to-manim (cdr pair))))
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vars "\n")
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"\n" body "\n")))
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;; This is the main function which is called to evaluate a code
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;; block.
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;;
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;; This function will evaluate the body of the source code and
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;; return the results as emacs-lisp depending on the value of the
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;; :results header argument
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;; - output means that the output to STDOUT will be captured and
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;; returned
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;; - value means that the value of the last statement in the
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;; source code block will be returned
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;;
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;; The most common first step in this function is the expansion of the
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;; PARAMS argument using `org-babel-process-params'.
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;;
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;; Please feel free to not implement options which aren't appropriate
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;; for your language (e.g. not all languages support interactive
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;; "session" evaluation). Also you are free to define any new header
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;; arguments which you feel may be useful -- all header arguments
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;; specified by the user will be available in the PARAMS variable.
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(defun org-babel-execute:manim (body params)
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"Execute a block of Manim code with org-babel.
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This function is called by `org-babel-execute-src-block'"
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(message "executing Manim source code block")
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(let* ((processed-params (org-babel-process-params params))
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;; set the session if the value of the session keyword is not the
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;; string `none'
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(session (unless (string= value "none")
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(org-babel-manim-initiate-session
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(cdr (assq :session processed-params)))))
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;; variables assigned for use in the block
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(vars (org-babel--get-vars processed-params))
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(result-params (assq :result-params processed-params))
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;; either OUTPUT or VALUE which should behave as described above
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(result-type (assq :result-type processed-params))
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;; expand the body with `org-babel-expand-body:manim'
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(full-body (org-babel-expand-body:manim
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body params processed-params)))
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;; actually execute the source-code block either in a session or
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;; possibly by dropping it to a temporary file and evaluating the
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;; file.
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;;
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;; for session based evaluation the functions defined in
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;; `org-babel-comint' will probably be helpful.
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;;
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;; for external evaluation the functions defined in
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;; `org-babel-eval' will probably be helpful.
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;;
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;; when forming a shell command, or a fragment of code in some
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;; other language, please preprocess any file names involved with
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;; the function `org-babel-process-file-name'. (See the way that
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;; function is used in the language files)
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))
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;; This function should be used to assign any variables in params in
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;; the context of the session environment.
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(defun org-babel-prep-session:manim (session params)
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"Prepare SESSION according to the header arguments specified in PARAMS."
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)
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(defun org-babel-manim-var-to-manim (var)
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"Convert an elisp var into a string of manim source code
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specifying a var of the same value."
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(format "%S" var))
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(defun org-babel-manim-table-or-string (results)
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"If the results look like a table, then convert them into an
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Emacs-lisp table, otherwise return the results as a string."
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)
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(defun org-babel-manim-initiate-session (&optional session)
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"If there is not a current inferior-process-buffer in SESSION then create.
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Return the initialized session."
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(unless (string= session "none")
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))
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(provide 'ob-manim)
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;;; ob-manim.el ends here
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